コード例 #1
0
def run_main(fasta_file, output_json, max_nchunks, chunk_key):
    log.info("Running {f} into {n} chunks".format(f=fasta_file, n=max_nchunks))
    output_dir = os.path.dirname(output_json)
    CU.write_fasta_chunks_to_file(output_json, fasta_file, max_nchunks,
                                  output_dir, "scattered-fasta", "fasta")
    return 0
コード例 #2
0
ファイル: chunker.py プロジェクト: Debian/pbcoretools 
def _args_run_chunk_fasta(args):
    return CU.write_fasta_chunks_to_file(args.chunk_report_json, args.fasta, args.max_total_chunks, args.output_dir, "chunk_fa", 'fasta')
コード例 #3
0
def _args_run_chunk_fasta(args):
    return CU.write_fasta_chunks_to_file(args.chunk_report_json, args.fasta,
                                         args.max_total_chunks,
                                         args.output_dir, "chunk_fa", 'fasta')
コード例 #4
0
def run_main(fasta_file, output_json, max_nchunks, chunk_key):
    log.info("Running {f} into {n} chunks".format(f=fasta_file, n=max_nchunks))
    output_dir = os.path.dirname(output_json)
    CU.write_fasta_chunks_to_file(output_json, fasta_file, max_nchunks, output_dir, "scattered-fasta", "fasta")
    return 0