def from_id_dict(d):
"""
Create an instance from a id dict of options (pbsmrtpipe.options.x:value}
"""
from pbsmrtpipe.pb_io import REGISTERED_WORKFLOW_OPTIONS
import pbsmrtpipe.schema_opt_utils as OP
adict = {}
for opt_id, schema in REGISTERED_WORKFLOW_OPTIONS.iteritems():
if opt_id in d:
v = d[opt_id]
OP.validate_value(schema, {opt_id: v})
adict[opt_id] = v
else:
value = OP.get_default_from_schema(schema)
d[opt_id] = value
# build map to instance var names
adict = {
k: d[v]
for k, v in WorkflowLevelOptions.ATTR_TO_ID.iteritems()
}
return WorkflowLevelOptions(**adict)
def from_id_dict(d):
"""
Create an instance from a id dict of options (pbsmrtpipe.options.x:value}
"""
adict = {}
for opt_id, schema in REGISTERED_WORKFLOW_OPTIONS.iteritems():
if opt_id in d:
v = d[opt_id]
OP.validate_value(schema, {opt_id: v})
adict[opt_id] = v
else:
value = OP.get_default_from_schema(schema)
d[opt_id] = value
# build map to instance var names
adict = {k: d[v] for k, v in WorkflowLevelOptions.ATTR_TO_ID.iteritems()}
return WorkflowLevelOptions(**adict)