def presmooth(self, seqids, window_size):
"""
precache MUST BE already called! Otherwise will have error!
"""
self.window_size = window_size
for seqid in seqids:
self.qv[seqid]['smoothed'] = c_basQV.maxval_per_window(self.qv[seqid]['unsmoothed'], window_size)
def presmooth(self, seqids, window_size):
"""
precache MUST BE already called! Otherwise will have error!
"""
self.window_size = window_size
for seqid in seqids:
self.qv[seqid]['smoothed'] = c_basQV.maxval_per_window(self.qv[seqid]['unsmoothed'], window_size)
def presmooth(self, seqids, window_size):
"""
precache MUST BE already called! Otherwise will have error!
"""
self.window_size = window_size
for seqid in seqids:
# logging.debug("smoothing sequence " + seqid)
# Replace .smooth_qv_regions by c_baseQV.maxval_per_window
for qv_name in basQVcacher.qv_names:
self.qv[seqid][qv_name + '_smoothed'] = \
c_basQV.maxval_per_window(self.qv[seqid][qv_name],
window_size)
def presmooth(self, seqids, window_size):
"""
precache MUST BE already called! Otherwise will have error!
"""
self.window_size = window_size
for seqid in seqids:
# logging.debug("smoothing sequence " + seqid)
# Replace .smooth_qv_regions by c_baseQV.maxval_per_window
for qv_name in basQVcacher.qv_names:
self.qv[seqid][qv_name + '_smoothed'] = \
c_basQV.maxval_per_window(self.qv[seqid][qv_name],
window_size)
