def test_known_obsolete_pass(self):
"""Test zero length HTTP 200 UniProt download."""
uni_id = 'Q8NI70'
fetcher = UniProtFetcher(self.dirs)
fetcher._download_uniprot(uni_id)
self.assertTrue(uni_id in fetcher.obs)
return None
def test_404_assigned_as_obsolete(self):
"""HTTP 404 errors should be assigned as obsolete, not missing."""
uni_id = 'P123451'
fetcher = UniProtFetcher(self.dirs)
fetcher._download_uniprot(uni_id)
self.assertTrue(uni_id in fetcher.obs)
return None
def test_download_uniprot_pass(self):
self._generate_dir_names()
expected = '>sp|P12345|AATM_RABIT Aspartate aminotransferase, mitochondrial OS=Oryctolagus cuniculus GN=GOT2 PE=1 SV=2\nMALLHSARVLSGVASAFHPGLAAAASARASSWWAHVEMGPPDPILGVTEAYKRDTNSKKM\nNLGVGAYRDDNGKPYVLPSVRKAEAQIAAKGLDKEYLPIGGLAEFCRASAELALGENSEV\nVKSGRFVTVQTISGTGALRIGASFLQRFFKFSRDVFLPKPSWGNHTPIFRDAGMQLQSYR\nYYDPKTCGFDFTGALEDISKIPEQSVLLLHACAHNPTGVDPRPEQWKEIATVVKKRNLFA\nFFDMAYQGFASGDGDKDAWAVRHFIEQGINVCLCQSYAKNMGLYGERVGAFTVICKDADE\nAKRVESQLKILIRPMYSNPPIHGARIASTILTSPDLRKQWLQEVKGMADRIIGMRTQLVS\nNLKKEGSTHSWQHITDQIGMFCFTGLKPEQVERLTKEFSIYMTKDGRISVAGVTSGNVGY\nLAHAIHQVTK\n'
uni_id = 'P12345'
fetcher = UniProtFetcher(self.dirs)
result = fetcher._download_uniprot(uni_id)
self.assertEqual(expected, result)
return None
