def test_execute_statement_10(self): """Verify invalid data can be inserted after '% w' is replaced with '%% w'.""" domain_data = test_data_utils.get_trixie_domain_data() # "Description": "ParB-like nuclease domain" description = domain_data["Description"] description = description.replace("nuclease domain", "nuclease % wdomain") domain_data["Description"] = description statement = get_domain_insert_statement(domain_data) statement = statement.replace("%", "%%") results_tup = find_domains.execute_statement(self.connection, statement) result = results_tup[0] type_error = results_tup[1] value_error = results_tup[2] msg = results_tup[3] self.trans.commit() domain_table_results = test_db_utils.get_data( test_db_utils.domain_table_query) with self.subTest(): self.assertEqual(len(domain_table_results), 1) with self.subTest(): self.assertEqual(result, 0) with self.subTest(): self.assertFalse(type_error) with self.subTest(): self.assertFalse(value_error)
def test_execute_statement_6(self): """Verify invalid data can NOT be inserted into domain table when there is an invalid column name.""" domain_data = test_data_utils.get_trixie_domain_data() statement = get_domain_insert_statement(domain_data) statement = statement.replace("Name", "Name_invalid") results_tup = find_domains.execute_statement(self.connection, statement) result = results_tup[0] type_error = results_tup[1] value_error = results_tup[2] msg = results_tup[3] self.trans.commit() domain_table_results = test_db_utils.get_data( test_db_utils.domain_table_query) with self.subTest(): self.assertEqual(len(domain_table_results), 0) with self.subTest(): self.assertEqual(result, 1) with self.subTest(): self.assertTrue(error_msg in msg) with self.subTest(): self.assertFalse(type_error) with self.subTest(): self.assertFalse(value_error)
def test_execute_statement_5(self): """Verify invalid data can NOT be inserted into domain table when there is a duplicated HitID.""" domain_data = test_data_utils.get_trixie_domain_data() statement = get_domain_insert_statement(domain_data) results_tup1 = find_domains.execute_statement(self.connection, statement) result1 = results_tup1[0] type_error1 = results_tup1[1] value_error1 = results_tup1[2] msg1 = results_tup1[3] self.trans.commit() domain_table_results1 = test_db_utils.get_data( test_db_utils.domain_table_query) new_trans = self.connection.begin() results_tup2 = find_domains.execute_statement(self.connection, statement) result2 = results_tup2[0] type_error2 = results_tup2[1] value_error2 = results_tup2[2] msg2 = results_tup2[3] new_trans.commit() domain_table_results2 = test_db_utils.get_data( test_db_utils.domain_table_query) with self.subTest(): self.assertEqual(len(domain_table_results1), 1) with self.subTest(): self.assertEqual(len(domain_table_results2), 1) with self.subTest(): self.assertEqual(result1, 0) with self.subTest(): self.assertEqual(result2, 0) with self.subTest(): self.assertFalse(type_error1) with self.subTest(): self.assertFalse(type_error2) with self.subTest(): self.assertFalse(value_error1) with self.subTest(): self.assertFalse(value_error2) with self.subTest(): self.assertFalse(error_msg in msg1) with self.subTest(): self.assertTrue(error_msg in msg2)
def test_execute_statement_3(self): """Verify valid data can be inserted into domain and gene_domain tables.""" domain_data = test_data_utils.get_trixie_domain_data() statement1 = get_domain_insert_statement(domain_data) results_tup1 = find_domains.execute_statement(self.connection, statement1) result1 = results_tup1[0] type_error1 = results_tup1[1] value_error1 = results_tup1[2] msg1 = results_tup1[3] gene_domain_data = test_data_utils.get_trixie_gene_domain_data() statement2 = get_gene_domain_insert_statement(gene_domain_data) results_tup2 = find_domains.execute_statement(self.connection, statement2) result2 = results_tup2[0] type_error2 = results_tup2[1] value_error2 = results_tup2[2] msg2 = results_tup2[3] self.trans.commit() gene_domain_table_results = test_db_utils.get_data( test_db_utils.gene_domain_table_query) domain_table_results = test_db_utils.get_data( test_db_utils.domain_table_query) with self.subTest(): self.assertEqual(len(domain_table_results), 1) with self.subTest(): self.assertEqual(len(gene_domain_table_results), 1) with self.subTest(): self.assertEqual(result1, 0) with self.subTest(): self.assertEqual(result2, 0) with self.subTest(): self.assertFalse(type_error1) with self.subTest(): self.assertFalse(type_error2) with self.subTest(): self.assertFalse(value_error1) with self.subTest(): self.assertFalse(value_error2)
def test_execute_statement_1(self): """Verify valid DomainStatus update data can be inserted into gene table.""" gene_table_results1 = test_db_utils.get_data( test_db_utils.gene_table_query) update_data = get_trixie_gene_table_domain_status_update_data_1() statement = get_gene_update_statement(update_data) results_tup = find_domains.execute_statement(self.connection, statement) result = results_tup[0] type_error = results_tup[1] value_error = results_tup[2] msg = results_tup[3] self.trans.commit() phage_table_results = test_db_utils.get_data( test_db_utils.phage_table_query) gene_table_results2 = test_db_utils.get_data( test_db_utils.gene_table_query) gene_domain_table_results = test_db_utils.get_data( test_db_utils.gene_domain_table_query) domain_table_results = test_db_utils.get_data( test_db_utils.domain_table_query) domain_status1 = gene_table_results1[0]["DomainStatus"] domain_status2 = gene_table_results2[0]["DomainStatus"] with self.subTest(): self.assertEqual(len(phage_table_results), 1) with self.subTest(): self.assertEqual(len(gene_table_results2), 1) with self.subTest(): self.assertEqual(len(domain_table_results), 0) with self.subTest(): self.assertEqual(len(gene_domain_table_results), 0) with self.subTest(): self.assertEqual(domain_status1, 0) with self.subTest(): self.assertEqual(domain_status2, 1) with self.subTest(): self.assertEqual(result, 0) with self.subTest(): self.assertFalse(type_error) with self.subTest(): self.assertFalse(value_error) with self.subTest(): self.assertIsInstance(msg, str)
def test_execute_statement_2(self): """Verify valid data can be inserted into domain table.""" domain_data = test_data_utils.get_trixie_domain_data() statement = get_domain_insert_statement(domain_data) results_tup = find_domains.execute_statement(self.connection, statement) result = results_tup[0] type_error = results_tup[1] value_error = results_tup[2] msg = results_tup[3] self.trans.commit() domain_table_results = test_db_utils.get_data( test_db_utils.domain_table_query) with self.subTest(): self.assertEqual(len(domain_table_results), 1) with self.subTest(): self.assertEqual(result, 0) with self.subTest(): self.assertFalse(type_error) with self.subTest(): self.assertFalse(value_error)
def test_execute_statement_4(self): """Verify invalid data can NOT be inserted into gene_domain table when there is no matching 'HitID' in the domain table.""" gene_domain_data = test_data_utils.get_trixie_gene_domain_data() statement = get_gene_domain_insert_statement(gene_domain_data) results_tup = find_domains.execute_statement(self.connection, statement) result = results_tup[0] type_error = results_tup[1] value_error = results_tup[2] msg = results_tup[3] self.trans.commit() gene_domain_table_results = test_db_utils.get_data( test_db_utils.gene_domain_table_query) with self.subTest(): self.assertEqual(len(gene_domain_table_results), 0) with self.subTest(): self.assertEqual(result, 1) with self.subTest(): self.assertFalse(type_error) with self.subTest(): self.assertFalse(value_error)