def testCannotConvert(self):
x = ["0.0.0", "1.1.0"]
for i in x:
for j in x:
if i == j:
continue
self.assertFalse(can_convert_nexson_forms(i, j))
def testCannotConvert(self):
x = ["0.0.0", "1.1.0"]
for i in x:
for j in x:
if i == j:
continue
self.assertFalse(can_convert_nexson_forms(i, j))
def testCanConvert(self):
x = ["0.0.0", "1.0.0"]
for i in x:
for j in x:
self.assertTrue(can_convert_nexson_forms(i, j))
output_choices = ['ot:nexson', 'nexson', 'nexml', 'input', 'provenance']
if output not in output_choices:
raise HTTP(
400, 'The "output" should be one of: "{c}"'.format(
c='", "'.join(output_choices)))
try:
working_dir = get_external_proc_dir_for_upload(request, '2nexml',
unique_id, is_upload)
except Exception, x:
raise HTTP(404)
if working_dir is None or (not os.path.exists(working_dir)):
raise HTTP(404)
_LOG.debug('created ' + working_dir)
NEXSON_VERSION = request.vars.nexml2json or '0.0.0'
if output.endswith('nexson') and (not can_convert_nexson_forms(
'nexml', NEXSON_VERSION)):
raise HTTP(400, 'The "nexml2json" argument be "0.0", "1.0", or "1.2"')
input_choices = ['nexus', 'newick', 'nexml']
first_tree_available_trees_id = 0
if is_upload:
if 'inputFormat' not in request.vars:
raise HTTP(400, T('The "inputFormat" argument must be supplied.'))
inp_format = request.vars.inputFormat or 'nexus'
inp_format = inp_format.lower()
if inp_format not in input_choices:
raise HTTP(
400, 'inputFormat should be one of: "{c}"'.format(
c='", "'.join(input_choices)))
if output not in ['ot:nexson', 'nexson']:
raise HTTP(
def testCanConvert(self):
x = ["0.0.0", "1.0.0"]
for i in x:
for j in x:
self.assertTrue(can_convert_nexson_forms(i, j))
if output == 'ot%3anexson':
# handle unwanted encoding (happens if file submitted)
output = 'ot:nexson'
output_choices = ['ot:nexson', 'nexson', 'nexml', 'input', 'provenance']
if output not in output_choices:
raise HTTP(400, 'The "output" should be one of: "{c}"'.format(c='", "'.join(output_choices)))
try:
working_dir = get_external_proc_dir_for_upload(request, '2nexml', unique_id, is_upload)
except Exception, x:
raise HTTP(404)
if working_dir is None or (not os.path.exists(working_dir)):
raise HTTP(404)
_LOG.debug('created ' + working_dir)
NEXSON_VERSION = request.vars.nexml2json or '0.0.0'
if output.endswith('nexson') and (not can_convert_nexson_forms('nexml', NEXSON_VERSION)):
raise HTTP(400, 'The "nexml2json" argument be "0.0", "1.0", or "1.2"')
input_choices = ['nexus', 'newick', 'nexml']
first_tree_available_trees_id = 0
if is_upload:
if 'inputFormat' not in request.vars:
raise HTTP(400, T('The "inputFormat" argument must be supplied.'))
inp_format = request.vars.inputFormat or 'nexus'
inp_format = inp_format.lower()
if inp_format not in input_choices:
raise HTTP(400, 'inputFormat should be one of: "{c}"'.format(c='", "'.join(input_choices)))
if output not in ['ot:nexson', 'nexson']:
raise HTTP(400, 'The "output" argument should be "nexson" in the first call with each "uploadId"')
orig_args['uploadId'] = unique_id
orig_args['inputFormat'] = inp_format
if output == "ot%3anexson":
# handle unwanted encoding (happens if file submitted)
output = "ot:nexson"
output_choices = ["ot:nexson", "nexson", "nexml", "input", "provenance"]
if output not in output_choices:
raise HTTP(400, 'The "output" should be one of: "{c}"'.format(c='", "'.join(output_choices)))
try:
working_dir = get_external_proc_dir_for_upload(request, "2nexml", unique_id, is_upload)
except Exception, x:
raise HTTP(404)
if working_dir is None or (not os.path.exists(working_dir)):
raise HTTP(404)
_LOG.debug("created " + working_dir)
NEXSON_VERSION = request.vars.nexml2json or "0.0.0"
if output.endswith("nexson") and (not can_convert_nexson_forms("nexml", NEXSON_VERSION)):
raise HTTP(400, 'The "nexml2json" argument be "0.0", "1.0", or "1.2"')
input_choices = ["nexus", "newick", "nexml"]
first_tree_available_trees_id = 0
if is_upload:
if "inputFormat" not in request.vars:
raise HTTP(400, T('The "inputFormat" argument must be supplied.'))
inp_format = request.vars.inputFormat or "nexus"
inp_format = inp_format.lower()
if inp_format not in input_choices:
raise HTTP(400, 'inputFormat should be one of: "{c}"'.format(c='", "'.join(input_choices)))
if output not in ["ot:nexson", "nexson"]:
raise HTTP(400, 'The "output" argument should be "nexson" in the first call with each "uploadId"')
orig_args["uploadId"] = unique_id
orig_args["inputFormat"] = inp_format
