def set_thermal_displacement_matrices(self, t_step=10, t_max=1000, t_min=0, cutoff_frequency=None): """ cutoff_frequency: phonon modes that have frequencies below cutoff_frequency are ignored. direction: Projection direction in reduced coordinates """ self._thermal_displacement_matrices = None if self._mesh is None: print("\'set_mesh\' has to finish correctly " "before \'set_thermal_displacement_matrices\'.") return False eigvecs = self._mesh.get_eigenvectors() frequencies = self._mesh.get_frequencies() mesh_nums = self._mesh.get_mesh_numbers() if self._mesh.get_eigenvectors() is None: print("Warning: Eigenvectors have to be calculated.") return False if np.prod(mesh_nums) != len(eigvecs): print("Warning: Sampling mesh must not be symmetrized.") return False tdm = ThermalDisplacementMatrices(frequencies, eigvecs, self._primitive.get_masses(), cutoff_frequency=cutoff_frequency) tdm.set_temperature_range(t_min, t_max, t_step) tdm.run() self._thermal_displacement_matrices = tdm return True
def set_thermal_displacement_matrices(self, t_step=10, t_max=1000, t_min=0, freq_min=None, freq_max=None, t_cif=None): """Prepare thermal displacement matrices Args: direction: Projection direction in reduced coordinates. freq_min: Phonons having frequency larger than this are included. freq_max: Phonons having frequency smaller than this are included. """ self._thermal_displacement_matrices = None if self._mesh is not None: eigvecs = self._mesh.get_eigenvectors() if eigvecs is None: print("Warning: Eigenvectors have to be calculated.") return False if np.prod(self._mesh.get_mesh_numbers()) != len(eigvecs): print("Warning: Sampling mesh must not be symmetrized.") return False iter_phonons = self._mesh else: if self._iter_mesh is not None: iter_phonons = self._iter_mesh else: print("Warning: \'set_mesh\' has to finish correctly " "before \'set_thermal_displacement_matrices\'.") return False tdm = ThermalDisplacementMatrices(iter_phonons, self._primitive.get_masses(), freq_min=freq_min, freq_max=freq_max, lattice=self._primitive.get_cell().T) if t_cif is None: tdm.set_temperature_range(t_min, t_max, t_step) else: tdm.set_temperatures([t_cif]) tdm.run() self._thermal_displacement_matrices = tdm return True
def set_thermal_displacement_matrices(self, t_step=10, t_max=1000, t_min=0, cutoff_eigenvalue=None): """ cutoff_eigenvalue: phonon modes that have frequencies below cutoff_eigenvalue are ignored. e.g. 0.1 (THz^2) direction: Projection direction in reduced coordinates """ if self._mesh==None: print "set_mesh has to be done before set_thermal_properties" sys.exit(1) eigvecs = self._mesh.get_eigenvectors() frequencies = self._mesh.get_frequencies() mesh_nums = self._mesh.get_mesh_numbers() if self._mesh.get_eigenvectors() is None: print "Eigenvectors have to be calculated." sys.exit(1) if np.prod(mesh_nums) != len(eigvecs): print "Sampling mesh must not be symmetrized." sys.exit(1) tdm = ThermalDisplacementMatrices(frequencies, eigvecs, self._primitive.get_masses(), cutoff_eigenvalue=cutoff_eigenvalue) tdm.set_temperature_range(t_min, t_max, t_step) # tdm.run() tdm.run_mesh() self._thermal_displacement_matrices = tdm
def set_thermal_displacement_matrices(self, t_step=10, t_max=1000, t_min=0, cutoff_frequency=None, t_cif=None): """ cutoff_frequency: phonon modes that have frequencies below cutoff_frequency are ignored. direction: Projection direction in reduced coordinates """ self._thermal_displacement_matrices = None if self._mesh is not None: eigvecs = self._mesh.get_eigenvectors() if eigvecs is None: print("Warning: Eigenvectors have to be calculated.") return False if np.prod(self._mesh.get_mesh_numbers()) != len(eigvecs): print("Warning: Sampling mesh must not be symmetrized.") return False iter_phonons = self._mesh else: if self._iter_mesh is not None: iter_phonons = self._iter_mesh else: print("Warning: \'set_mesh\' has to finish correctly " "before \'set_thermal_displacement_matrices\'.") return False tdm = ThermalDisplacementMatrices( iter_phonons, self._primitive.get_masses(), cutoff_frequency=cutoff_frequency, lattice=self._primitive.get_cell().T) if t_cif is None: tdm.set_temperature_range(t_min, t_max, t_step) else: tdm.set_temperatures([t_cif]) tdm.run() self._thermal_displacement_matrices = tdm return True
def set_thermal_displacement_matrices(self, t_step=10, t_max=1000, t_min=0, cutoff_eigenvalue=None): """ cutoff_eigenvalue: phonon modes that have frequencies below cutoff_eigenvalue are ignored. e.g. 0.1 (THz^2) direction: Projection direction in reduced coordinates """ if self._mesh == None: print "set_mesh has to be done before set_thermal_properties" sys.exit(1) eigvecs = self._mesh.get_eigenvectors() frequencies = self._mesh.get_frequencies() mesh_nums = self._mesh.get_mesh_numbers() if self._mesh.get_eigenvectors() is None: print "Eigenvectors have to be calculated." sys.exit(1) if np.prod(mesh_nums) != len(eigvecs): print "Sampling mesh must not be symmetrized." sys.exit(1) tdm = ThermalDisplacementMatrices(frequencies, eigvecs, self._primitive.get_masses(), cutoff_eigenvalue=cutoff_eigenvalue) tdm.set_temperature_range(t_min, t_max, t_step) # tdm.run() tdm.run_mesh() self._thermal_displacement_matrices = tdm