def tax_diff(self, options):
"""Taxonomy difference command."""
check_file_exists(options.tax1_file)
check_file_exists(options.tax2_file)
if not os.path.exists(options.output_dir):
os.makedirs(options.output_dir)
td = TaxDiff()
td.tax_diff(options.tax1_file, options.tax2_file,
options.include_user_taxa, options.output_dir)
self.logger.info('Done.')
def tree_tax_diff(self, options):
"""Taxonomy difference command."""
check_file_exists(options.input_tree1)
check_file_exists(options.input_tree2)
if not os.path.exists(options.output_dir):
os.makedirs(options.output_dir)
td = TaxDiff()
td.tree_tax_diff(options.input_tree1, options.input_tree2,
options.output_dir)
self.logger.info('Done.')