def readme_file(outdir):
"""
Create README file if it does not exist.
If it exists, do nothing.
Parameters
----------
outdir: path
Full path to the output directory.
"""
file_path = os.path.join(outdir, 'README.md')
if not os.path.exists(file_path):
text = 'Empty README, please fill in describing the dataset in more detail.'
LGR.warning('phys2bids could not find README,'
'generating it EMPTY, please fill in the necessary info')
utils.writefile(file_path, '', text)
def print_summary(filename, ntp_expected, ntp_found, samp_freq, time_offset,
outfile):
"""
Print a summary onscreen and in file with informations on the files.
Parameters
----------
filename: str
Name of the input of phys2bids.
ntp_expected: int
Number of expected timepoints, as defined by user.
ntp_found: int
Number of timepoints found with the automatic process.
samp_freq: float
Frequency of sampling for the output file.
time_offset: float
Difference between beginning of file and first TR.
outfile: str or path
Fullpath to output file.
Notes
-----
Outcome:
summary: str
Prints the summary on screen
outfile: .log file
File containing summary
"""
start_time = -time_offset
summary = (f'\n------------------------------------------------\n'
f'Filename: {filename}\n'
f'\n'
f'Timepoints expected: {ntp_expected}\n'
f'Timepoints found: {ntp_found}\n'
f'Sampling Frequency: {samp_freq} Hz\n'
f'Sampling started at: {start_time} s\n'
f'Tip: Time 0 is the time of first trigger\n'
f'------------------------------------------------\n')
LGR.info(summary)
utils.writefile(outfile, '.log', summary)
def test_writefile(tmpdir):
ext = '.txt'
test_old_path = tmpdir.join('foo.txt')
test_text = 'Wubba lubba dub dub!'
utils.writefile(test_old_path, ext, test_text)