of the License, or (at your option) any later version.
This program is distributed in the hope that it will be useful,
but WITHOUT ANY WARRANTY; without even the implied warranty of
MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
GNU General Public License for more details.
You should have received a copy of the GNU General Public License
along with this program; if not, write to the Free Software
Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301,
USA.
"""
from argparse import Namespace as _Namespace
from pkg_resources import get_distribution as _get_distribution
__version__ = _get_distribution('warcprox').version
try:
import queue
except ImportError:
import Queue as queue
import datetime
def digest_str(hash_obj, base32=False):
import base64
return hash_obj.name.encode('utf-8') + b':' + (
base64.b32encode(hash_obj.digest()) if base32
else hash_obj.hexdigest().encode('ascii'))
class Options(_Namespace):
def __getattr__(self, name):
try:
of the License, or (at your option) any later version.
This program is distributed in the hope that it will be useful,
but WITHOUT ANY WARRANTY; without even the implied warranty of
MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
GNU General Public License for more details.
You should have received a copy of the GNU General Public License
along with this program; if not, write to the Free Software
Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301,
USA.
"""
from argparse import Namespace as _Namespace
from pkg_resources import get_distribution as _get_distribution
__version__ = _get_distribution('warcprox').version
try:
import queue
except ImportError:
import Queue as queue
import datetime
def digest_str(hash_obj, base32=False):
import base64
return hash_obj.name.encode('utf-8') + b':' + (base64.b32encode(
hash_obj.digest()) if base32 else hash_obj.hexdigest().encode('ascii'))
class Options(_Namespace):
def __getattr__(self, name):
from pkg_resources import DistributionNotFound as _DistributionNotFound
from pkg_resources import get_distribution as _get_distribution
from . import io
try:
__version__ = _get_distribution('limix-legacy').version
except _DistributionNotFound:
__version__ = 'unknown'
def test():
import os
p = __import__('limix_legacy').__path__[0]
src_path = os.path.abspath(p)
old_path = os.getcwd()
os.chdir(src_path)
try:
return_code = __import__('pytest').main([
'-q',
'--doctest-modules',
'--ignore=modules/dirIndirVD_commented_forDistrib.py',
'--ignore=modules/social_data_HSmice_paper.py',
'--ignore=deprecated/io/genotype_reader.py',
'--ignore=deprecated/io/output_writer.py',
'--ignore=deprecated/io/phenotype_reader.py',
'--ignore=io/genotype_reader.py',
'--ignore=io/output_writer.py',
'--ignore=io/phenotype_reader.py',
])
# This Source Code Form is subject to the terms of the Mozilla Public
# License, v. 2.0. If a copy of the MPL was not distributed with this
# file, You can obtain one at http://mozilla.org/MPL/2.0/.
#
# Copyright (C) 2017, James R. Barlow (https://github.com/jbarlow83/)
from pkg_resources import DistributionNotFound
from pkg_resources import get_distribution as _get_distribution
try:
__version__ = _get_distribution(__package__).version
except DistributionNotFound:
__version__ = "Not installed"
__all__ = ['__version__']
from .mtSet import MTSet
from .varDecomp import VarianceDecomposition
from pkg_resources import get_distribution as _get_distribution
from pkg_resources import DistributionNotFound as _DistributionNotFound
try:
__version__ = _get_distribution('limix').version
except _DistributionNotFound:
__version__ = 'unknown'
def test():
import os
p = __import__('limix').__path__[0]
src_path = os.path.abspath(p)
old_path = os.getcwd()
os.chdir(src_path)
try:
return_code = __import__('pytest').main(['-q'])
finally:
os.chdir(old_path)
if return_code == 0:
print("Congratulations. All tests have passed!")
return return_code
from __future__ import absolute_import as _absolute_import
import _cffi_backend
from pkg_resources import DistributionNotFound as _DistributionNotFound
from pkg_resources import get_distribution as _get_distribution
from . import cprob, ellf
from .api import get_include, get_lib
try:
__version__ = _get_distribution('ncephes').version
except _DistributionNotFound:
__version__ = 'unknown'
def test():
import os
p = __import__('ncephes').__path__[0]
src_path = os.path.abspath(p)
old_path = os.getcwd()
os.chdir(src_path)
try:
return_code = __import__('pytest').main(['-q', '--doctest-modules'])
finally:
os.chdir(old_path)
if return_code == 0:
print("Congratulations. All tests have passed!")
from pkg_resources import get_distribution as _get_distribution
from pkg_resources import DistributionNotFound as _DistributionNotFound
try:
__version__ = _get_distribution('fscLVM').version
except _DistributionNotFound:
__version__ = 'unknown'
from .utils import (initFA, load_hdf5, load_txt, preTrain, plotLoadings,
plotFactors, plotRelevance, saveFA, dumpFA)
from .core import (CSparseFA)
from __future__ import absolute_import as _
from __future__ import unicode_literals as _
from pkg_resources import DistributionNotFound as _DistributionNotFound
from pkg_resources import get_distribution as _get_distribution
from .core import PickleByInit, SlotPickleMixin
try:
__version__ = _get_distribution('pickle_mixin').version
except _DistributionNotFound:
__version__ = 'unknown'
def test():
r"""Tests this package.
You will need `pytest` installed in order to use this function.
"""
import os
p = __import__('pickle_mixin').__path__[0]
src_path = os.path.abspath(p)
old_path = os.getcwd()
os.chdir(src_path)
try:
return_code = __import__('pytest').main(['-q', '--doctest-modules'])
finally:
os.chdir(old_path)
if return_code == 0:
from ._algebra import *
from ._channels import *
from ._error_control_block import *
from ._error_control_convolutional import *
from ._finite_state_machine import *
from ._modulation import *
from ._pulses import *
from ._quantization import *
from ._sequences import *
from ._source_coding import *
from ._sources import *
from ._util import *
import inspect as _inspect
import sys as _sys
for _, _cls in _inspect.getmembers(_sys.modules[__name__], _inspect.isclass):
if hasattr(_cls, '_process_docstring'):
_cls._process_docstring()
from pkg_resources import get_distribution as _get_distribution
__version__ = _get_distribution('komm').version
from __future__ import absolute_import as _absolute_import
from pkg_resources import get_distribution as _get_distribution
from pkg_resources import DistributionNotFound as _DistributionNotFound
try:
__version__ = _get_distribution('limix_tool').version
except _DistributionNotFound:
__version__ = 'unknown'
def test():
import os
p = __import__('limix_tool').__path__[0]
src_path = os.path.abspath(p)
old_path = os.getcwd()
os.chdir(src_path)
try:
return_code = __import__('pytest').main(['-q'])
finally:
os.chdir(old_path)
if return_code == 0:
print("Congratulations. All tests have passed!")
return return_code
r"""
******************
limix-core package
******************
A flexible and fast mixed model toolbox.
"""
from __future__ import absolute_import as _absolute_import
from pkg_resources import DistributionNotFound as _DistributionNotFound
from pkg_resources import get_distribution as _get_distribution
try:
__version__ = _get_distribution('limix-core').version
except _DistributionNotFound:
__version__ = 'unknown'
def test():
import os
p = __import__('limix_core').__path__[0]
src_path = os.path.abspath(p)
old_path = os.getcwd()
os.chdir(src_path)
try:
return_code = __import__('pytest').main(['-q', '--doctest-modules'])
finally:
os.chdir(old_path)
from brozzler.browser import Browser
from umbra.controller import AmqpBrowserController
from pkg_resources import get_distribution as _get_distribution
__version__ = _get_distribution('umbra').version
Umbra = AmqpBrowserController
XmpContainer = namedtuple('XmpContainer', ['rdf_type', 'py_type', 'insert_fn'])
XMP_CONTAINERS = [
XmpContainer('Bag', set, set.add),
XmpContainer('Seq', list, list.append),
]
# These are the illegal characters in XML 1.0. (XML 1.1 is a bit more permissive,
# but we'll be strict to ensure wider compatibility.)
re_xml_illegal_chars = re.compile(
r"(?u)[^\x09\x0A\x0D\x20-\uD7FF\uE000-\uFFFD\u10000-\u10FFFF]"
)
# Repeat this to avoid circular from top package's pikepdf.__version__
try:
pikepdf_version = _get_distribution(__name__).version
except DistributionNotFound:
pikepdf_version = "unknown version"
def encode_pdf_date(d: datetime) -> str:
"""Encode Python datetime object as PDF date string
From Adobe pdfmark manual:
(D:YYYYMMDDHHmmSSOHH'mm')
D: is an optional prefix. YYYY is the year. All fields after the year are
optional. MM is the month (01-12), DD is the day (01-31), HH is the
hour (00-23), mm are the minutes (00-59), and SS are the seconds
(00-59). The remainder of the string defines the relation of local
time to GMT. O is either + for a positive difference (local time is
later than GMT) or - (minus) for a negative difference. HH' is the
from pkg_resources import get_distribution as _get_distribution
from pkg_resources import DistributionNotFound as _DistributionNotFound
try:
__version__ = _get_distribution('slalom').version
except _DistributionNotFound:
__version__ = 'unknown'
from .utils import (initFA, load_hdf5, load_txt, preTrain, plotLoadings,
plotFactors, plotRelevance, saveFA, dumpFA)
from .core import (CSparseFA)
import os as _os
from pkg_resources import (
get_distribution as _get_distribution,
DistributionNotFound as _DistributionNotFound,
)
from .multyvac import (
Multyvac,
MultyvacError,
RequestError,
)
# Automatically determine the version of the package
try:
_dist = _get_distribution('multyvac')
if not __file__.startswith(_os.path.join(_dist.location, 'multyvac')):
# not installed, but there is another version that *is*
raise _DistributionNotFound
except _DistributionNotFound:
__version__ = 'Only available when installed with setup.py'
else:
# FIXME: If there are two egg-info folders (an older version failed to
# uninstall), then the older one is chosen, which is incorrect.
__version__ = _dist.version
# Default Multyvac singleton
_multyvac = Multyvac()
on_multyvac = _multyvac.on_multyvac
send_log_to_support = _multyvac.send_log_to_support
from __future__ import absolute_import as _absolute_import
from pkg_resources import DistributionNotFound as _DistributionNotFound
from pkg_resources import get_distribution as _get_distribution
from . import clusterrun
from .util import kill_group
try:
__version__ = _get_distribution('limix_lsf').version
except (_DistributionNotFound, AttributeError):
__version__ = 'unknown'
def test():
import os
p = __import__('limix_lsf').__path__[0]
src_path = os.path.abspath(p)
old_path = os.getcwd()
os.chdir(src_path)
try:
return_code = __import__('pytest').main(['-q'])
finally:
os.chdir(old_path)
if return_code == 0:
print("Congratulations. All tests have passed!")
return return_code
# Re-exported imports
import pandas as pd
from numpy import nan, where
from re import sub
# Hidden imports
import builtins as _builtins
from inspect import stack as _stack
from keyword import iskeyword as _iskeyword
from pkg_resources import get_distribution as _get_distribution
from sys import stderr as _logfile
__version__ = _get_distribution("unitable").version
# Global data frame
_df = pd.DataFrame()
# Utility functions for manipulating caller's locals
_builtins = frozenset(dir(_builtins))
def _generate(name):
"""
Generate a new variable in the caller's locals. Test if the variable name is valid.
"""
_locals = _stack()[2][0].f_locals
if _iskeyword(name):
raise ValueError("cannot name variable '{}' because it is a Python keyword".format(name))
if name in _builtins:
raise ValueError("cannot name variable '{}' because it is a Python builtin".format(name))
if name in _locals:
from .core.element import element, Element
from .core.events import event, Events
from .core.layout import Layout
from .core.vdom import vdom
from .widgets.input import Input
from .widgets.html import html
from .widgets.utils import Module, Import, hotswap, multiview
from .widgets.jupyter import JupyterDisplay
from .widgets.image import Image
from .tools import Var, html_to_vdom
try:
__version__ = _get_distribution(__name__).version
except _DistributionNotFound: # pragma: no cover
# package is not installed
__version__ = "0.0.0"
# try to automatically setup the dialect's import hook
try:
import pyalect
import tagged
import htm
except ImportError: # pragma: no cover
pass
else:
from . import dialect
del pyalect
def _setupLog():
handler = logging.StreamHandler()
handler.setFormatter(logging.Formatter(logging.BASIC_FORMAT))
#'%(asctime)s:%(levelname)s: %(name)-15s; %(module)s %(message)s'
_log.addHandler(handler)
_log.setLevel(logging.DEBUG)
_setupLog()
# PEP0440 compatible formatted version, see:
# https://www.python.org/dev/peps/pep-0440/
#
# Generic release markers:
# X.Y
# X.Y.Z # For bugfix releases
#
# Admissible pre-release markers:
# X.YaN # Alpha release
# X.YbN # Beta release
# X.YrcN # Release Candidate
# X.Y # Final release
#
# Dev branch marker is: 'X.Y.dev' or 'X.Y.devN' where N is an integer.
# 'X.Y.dev0' is the canonical version of 'X.Y.dev'
#
from pkg_resources import get_distribution as _get_distribution
__version__ = _get_distribution('scikit-sdr').version
you may not use this file except in compliance with the License.
You may obtain a copy of the License at
http://www.apache.org/licenses/LICENSE-2.0
Unless required by applicable law or agreed to in writing, software
distributed under the License is distributed on an "AS IS" BASIS,
WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
See the License for the specific language governing permissions and
limitations under the License.
"""
import logging
from pkg_resources import get_distribution as _get_distribution
__version__ = _get_distribution('brozzler').version
class ShutdownRequested(Exception):
pass
class NothingToClaim(Exception):
pass
class CrawlStopped(Exception):
pass
class PageInterstitialShown(Exception):
http://www.apache.org/licenses/LICENSE-2.0
Unless required by applicable law or agreed to in writing, software
distributed under the License is distributed on an "AS IS" BASIS,
WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
See the License for the specific language governing permissions and
limitations under the License.
"""
import json as _json
import logging as _logging
import surt as _surt
from pkg_resources import get_distribution as _get_distribution
__version__ = _get_distribution('brozzler').version
class ShutdownRequested(Exception):
pass
class NothingToClaim(Exception):
pass
class CrawlJobStopped(Exception):
pass
class ReachedLimit(Exception):
def __init__(self, http_error=None, warcprox_meta=None, http_payload=None):
if http_error:
if "warcprox-meta" in http_error.headers:
self.warcprox_meta = _json.loads(http_error.headers["warcprox-meta"])
from __future__ import absolute_import as _absolute_import
from pkg_resources import get_distribution as _get_distribution
from pkg_resources import DistributionNotFound as _DistributionNotFound
from .task import TaskResult
try:
__version__ = _get_distribution('limix_exp').version
except (_DistributionNotFound, AttributeError):
__version__ = 'unknown'
def test():
import os
p = __import__('limix_exp').__path__[0]
src_path = os.path.abspath(p)
old_path = os.getcwd()
os.chdir(src_path)
try:
return_code = __import__('pytest').main(['-q'])
finally:
os.chdir(old_path)
if return_code == 0:
print("Congratulations. All tests have passed!")
return return_code
from __future__ import absolute_import as _absolute_import
from . import lmm
from . import glmm
from . import cov
from . import lik
from . import mean
from . import link
from . import random
from pkg_resources import get_distribution as _get_distribution
from pkg_resources import DistributionNotFound as _DistributionNotFound
try:
__version__ = _get_distribution('limix_inference').version
except _DistributionNotFound:
__version__ = 'unknown'
def test():
import os
p = __import__('limix_inference').__path__[0]
src_path = os.path.abspath(p)
old_path = os.getcwd()
os.chdir(src_path)
try:
return_code = __import__('pytest').main(['-q'])
finally:
os.chdir(old_path)
