datatype_fp = os.path.join(TEST_DATA_DIR, "training_datatypes.yaml")
tuto_fp = os.path.join(TEST_DATA_DIR, "training_tutorial.md")
tuto_wo_zenodo_fp = os.path.join(TEST_DATA_DIR,
"training_tutorial_wo_zenodo.md")
zenodo_link = 'https://zenodo.org/record/1321885'
# load a workflow generated from Galaxy
WF_FP = os.path.join(TEST_DATA_DIR, "training_workflow.ga")
with open(WF_FP, "r") as wf_f:
wf = json.load(wf_f)
# load wf_param_values (output of tutorial.get_wf_param_values on wf['steps']['4'])
with open(os.path.join(TEST_DATA_DIR, "training_wf_param_values.json"),
"r") as wf_param_values_f:
wf_param_values = json.load(wf_param_values_f)
# configuration
RUNNABLE = for_path(WF_FP)
CTX = cli.Context()
CTX.planemo_directory = "/tmp/planemo-test-workspace"
KWDS = {
'topic_name': 'my_new_topic',
'topic_title': "New topic",
'topic_target': "use",
'topic_summary': "Topic summary",
'tutorial_name': "new_tuto",
'tutorial_title': "Title of tuto",
'hands_on': True,
'slides': True,
'workflow': None,
'workflow_id': None,
'zenodo_link': None,
'datatypes': os.path.join(TEST_DATA_DIR, "training_datatypes.yaml"),
'templates': None,
def test_context(self):
context = cli.Context()
context.planemo_directory = "/tmp/planemo-test-workspace"
return context
def test_context():
context = cli.Context()
context.planemo_directory = "/tmp/planemo-test-workspace"
context.verbose = run_verbosely()
return context