def get_or_create_repository(ctx, owner, repo, dry_run=True, **kwds):
"""Clones or creates a repository and returns path on disk"""
target = os.path.realpath(tempfile.mkdtemp())
remote_repo = "https://github.com/{owner}/{repo}".format(owner=owner, repo=repo)
try:
ctx.log('Cloning {}'.format(remote_repo))
git.clone(ctx, src=remote_repo, dest=target)
except Exception:
ctx.log('Creating repository {}'.format(remote_repo))
target = create_repository(ctx, owner=owner, repo=repo, dest=target, dry_run=dry_run)
return target
def _path_on_disk(ctx, path):
git_path = None
if path.startswith("git:"):
git_path = path
elif path.startswith("git+"):
git_path = path[len("git+"):]
if git_path is None:
yield path
else:
with temp_directory() as git_repo:
git.clone(ctx, git_path, git_repo)
yield git_repo
def _path_on_disk(ctx, path):
git_path = None
if path.startswith("git:"):
git_path = path
elif path.startswith("git+"):
git_path = path[len("git+"):]
if git_path is None:
yield path
else:
with temp_directory() as git_repo:
git.clone(ctx, git_path, git_repo)
yield git_repo
def _path_on_disk(path):
git_path = None
if path.startswith("git:"):
git_path = path
elif path.startswith("git+"):
git_path = path[len("git+"):]
if git_path is None:
yield path
else:
with temp_directory() as git_repo:
# TODO: pass ctx down through
git.clone(None, git_path, git_repo)
yield git_repo
def _path_on_disk(path):
git_path = None
if path.startswith("git:"):
git_path = path
elif path.startswith("git+"):
git_path = path[len("git+"):]
if git_path is None:
yield path
else:
with temp_directory() as git_repo:
# TODO: pass ctx down through
git.clone(None, git_path, git_repo)
yield git_repo
def clone_bioconda_repo(path):
"""Clone bioconda repository in given path."""
bioconda_repo = "[email protected]:bioconda/bioconda-recipes.git"
git.clone(None, bioconda_repo, path)
return "git clone of bioconda repo worked"
def clone_bioconda_repo(path):
"""Clone bioconda repository in given path."""
bioconda_repo = "[email protected]:bioconda/bioconda-recipes.git"
git.clone(None, bioconda_repo, path)
return "git clone of bioconda repo worked"
