コード例 #1
0
def _find_raw_repositories(ctx, path, **kwds):
    name = kwds.get("name")
    recursive = kwds.get("recursive", False)

    shed_file_dirs = []
    for pattern in REPO_METADATA_FILES:
        shed_file_dirs.extend(find_matching_directories(
            path, pattern, recursive=recursive
        ))
    config_name = None
    if len(shed_file_dirs) == 1:
        shed_file_dir = shed_file_dirs[0]
        try:
            config = shed_repo_config(ctx, shed_file_dir, name=name)
        except Exception as e:
            error_message = PARSING_PROBLEM % (shed_file_dir, e)
            exception = RuntimeError(error_message)
            _handle_realization_error(exception, **kwds)
            return [exception]
        config_name = config.get("name")

    if len(shed_file_dirs) > 1 and name is not None:
        raise Exception(NAME_INVALID_MESSAGE)
    if config_name is not None and name is not None:
        if config_name != name:
            raise Exception(CONFLICTING_NAMES_MESSAGE)
    raw_dirs = shed_file_dirs or [path]
    kwds_copy = kwds.copy()
    kwds_copy["name"] = name
    return _build_raw_repo_objects(ctx, raw_dirs, **kwds_copy)
コード例 #2
0
ファイル: __init__.py プロジェクト: martenson/planemo
def _find_raw_repositories(ctx, path, **kwds):
    name = kwds.get("name", None)
    recursive = kwds.get("recursive", False)

    shed_file_dirs = find_matching_directories(
        path, SHED_CONFIG_NAME, recursive=recursive
    )

    config_name = None
    if len(shed_file_dirs) == 1:
        shed_file_dir = shed_file_dirs[0]
        try:
            config = shed_repo_config(ctx, shed_file_dir, name=name)
        except Exception as e:
            error_message = PARSING_PROBLEM % (shed_file_dir, e)
            exception = RuntimeError(error_message)
            _handle_realization_error(exception, **kwds)
            return [exception]
        config_name = config.get("name", None)

    if len(shed_file_dirs) > 1 and name is not None:
        raise Exception(NAME_INVALID_MESSAGE)
    if config_name is not None and name is not None:
        if config_name != name:
            raise Exception(CONFLICTING_NAMES_MESSAGE)
    raw_dirs = shed_file_dirs or [path]
    kwds_copy = kwds.copy()
    kwds_copy["name"] = name
    return _build_raw_repo_objects(ctx, raw_dirs, **kwds_copy)
コード例 #3
0
def yield_recipes_on_paths(ctx, paths, recursive):
    for path in paths:
        recipe_dirs = find_matching_directories(path,
                                                "meta.yaml",
                                                recursive=recursive)
        for recipe_dir in recipe_dirs:
            yield recipe_dir
コード例 #4
0
def _find_raw_repositories(path, **kwds):
    name = kwds.get("name", None)
    recursive = kwds.get("recursive", False)

    shed_file_dirs = find_matching_directories(path,
                                               SHED_CONFIG_NAME,
                                               recursive=recursive)

    config_name = None
    if len(shed_file_dirs) == 1:
        shed_file_dir = shed_file_dirs[0]
        try:
            config = shed_repo_config(shed_file_dir, name=name)
        except Exception as e:
            error_message = PARSING_PROBLEM % (shed_file_dir, e)
            return [RuntimeError(error_message)]
        config_name = config.get("name", None)

    if len(shed_file_dirs) > 1 and name is not None:
        raise Exception(NAME_INVALID_MESSAGE)
    if config_name is not None and name is not None:
        if config_name != name:
            raise Exception(CONFLICTING_NAMES_MESSAGE)
    raw_dirs = shed_file_dirs or [path]
    kwds_copy = kwds.copy()
    kwds_copy["name"] = name
    return _build_raw_repo_objects(raw_dirs, **kwds_copy)
コード例 #5
0
ファイル: conda_lint.py プロジェクト: galaxyproject/planemo
def yield_recipes_on_paths(ctx, paths, recursive):
    for path in paths:
        recipe_dirs = find_matching_directories(
            path, "meta.yaml", recursive=recursive
        )
        for recipe_dir in recipe_dirs:
            yield recipe_dir