def _lint_tsts(path, lint_context):
runnable = for_path(path)
test_cases = cases(runnable)
all_tests_valid = False
if len(test_cases) == 0:
lint_context.warn("Workflow missing test cases.")
else:
all_tests_valid = True
for test_case in test_cases:
if not _lint_case(path, test_case, lint_context):
all_tests_valid = False
if all_tests_valid:
lint_context.valid("Tests appear structurally correct")
def test_non_file_case_checker():
"""Verify simply usage of :func:`planemo.runnable.TestCase.check`."""
int_tool_path = os.path.join(TEST_DATA_DIR, "int_tool.cwl")
test_cases = cases(for_path(int_tool_path))
assert len(test_cases) == 1
test_case = test_cases[0]
outputs_dict = {
"output": 4,
}
sd = test_case.structured_test_data(MockRunResponse(outputs_dict))
assert sd["data"]["status"] == "success"
bad_outputs_dict = {
"output": 5,
}
sd = test_case.structured_test_data(MockRunResponse(bad_outputs_dict))
assert sd["data"]["status"] == "failure"
def test_non_file_case_checker():
"""Verify simply usage of :func:`planemo.runnable.TestCase.check`."""
int_tool_path = os.path.join(TEST_DATA_DIR, "int_tool.cwl")
test_cases = cases(for_path(int_tool_path))
assert len(test_cases) == 1
test_case = test_cases[0]
outputs_dict = {
"output": 4,
}
sd = test_case.structured_test_data(MockRunResponse(outputs_dict))
assert sd["data"]["status"] == "success"
bad_outputs_dict = {
"output": 5,
}
sd = test_case.structured_test_data(MockRunResponse(bad_outputs_dict))
assert sd["data"]["status"] == "failure"
def _lint_tsts(path, lint_context):
runnables = for_path(path, return_all=True)
if not isinstance(runnables, list):
runnables = [runnables]
for runnable in runnables:
test_cases = cases(runnable)
all_tests_valid = False
if len(test_cases) == 0:
lint_context.warn("Workflow missing test cases.")
else:
all_tests_valid = True
for test_case in test_cases:
if not _lint_case(path, test_case, lint_context):
all_tests_valid = False
if all_tests_valid:
lint_context.valid(
f"Tests appear structurally correct for {runnable.path}")
def test_file_case_checker():
hello_txt_path = os.path.join(TEST_DATA_DIR, "hello.txt")
int_tool_path = os.path.join(TEST_DATA_DIR, "cat_tool.cwl")
test_cases = cases(for_path(int_tool_path))
assert len(test_cases) == 1
test_case = test_cases[0]
outputs_dict = {
"output_file": {
"path": hello_txt_path,
}
}
sd = test_case.structured_test_data(MockRunResponse(outputs_dict))
assert sd["data"]["status"] == "success"
not_hello_txt_path = os.path.join(TEST_DATA_DIR, "int_tool_job.json")
bad_outputs_dict = {
"output_file": {
"path": not_hello_txt_path,
}
}
sd = test_case.structured_test_data(MockRunResponse(bad_outputs_dict))
assert sd["data"]["status"] == "failure"
def test_file_case_checker():
hello_txt_path = os.path.join(TEST_DATA_DIR, "hello.txt")
int_tool_path = os.path.join(TEST_DATA_DIR, "cat_tool.cwl")
test_cases = cases(for_path(int_tool_path))
assert len(test_cases) == 1
test_case = test_cases[0]
outputs_dict = {
"output_file": {
"path": hello_txt_path,
}
}
sd = test_case.structured_test_data(MockRunResponse(outputs_dict))
assert sd["data"]["status"] == "success"
not_hello_txt_path = os.path.join(TEST_DATA_DIR, "int_tool_job.json")
bad_outputs_dict = {
"output_file": {
"path": not_hello_txt_path,
}
}
sd = test_case.structured_test_data(MockRunResponse(bad_outputs_dict))
assert sd["data"]["status"] == "failure"