def get_layout(title, labels, labels2=None, plot_log=False):
if plot_log:
yaxis = go.YAxis(title='Stężenie molowe [μM]',
type='log',
tickvals=logscale())
t = 'Estymowane wartości stężeń w próbce CSF - {}'.format(title)
return go.Layout(
xaxis=go.XAxis(
title='Analizowana próbka [#]',
ticks="",
showticklabels=True,
ticktext=labels,
tickvals=[i for i in range(len(labels))],
zeroline=False,
),
yaxis=yaxis,
title=t,
)
else:
xaxis = go.XAxis(
title='Błąd względny [%]',
zeroline=False,
)
t = 'Maksymalny błąd względny estymacji stężenia - {}'.format(title)
return go.Layout(
xaxis=xaxis,
yaxis=go.YAxis(
title='Analizowana próbka [#]',
ticks="",
showticklabels=True,
ticktext=labels,
tickvals=[i for i in range(len(labels))],
zeroline=False,
titlefont=dict(color='#1f77b4'),
tickfont=dict(color='#1f77b4'),
),
yaxis2=dict(
title='Analizowana próbka [#]',
ticks="",
showticklabels=True,
ticktext=labels2,
tickvals=[i for i in range(len(labels2))],
zeroline=False,
overlaying='y',
side='right',
titlefont=dict(color='#ff7f0e'),
tickfont=dict(color='#ff7f0e'),
),
title=t,
)
def generate_plot_30d(queue_name):
df = Datasources.get_latest_data_for(
"aws-athena-query-results-lancs-history-30d")
filtered_df = df[df["match_apf_queue"] == queue_name]
if len(filtered_df) == 0:
return None
filtered_df.insert(4, "long_jobs",
filtered_df["total_jobs"] - filtered_df["short_jobs"])
trace1 = go.Bar(
x=filtered_df["job_date"],
y=filtered_df["short_jobs"],
name="Short jobs",
marker=dict(color="#C21E29", ),
offset=0.5,
)
trace2 = go.Bar(
x=filtered_df["job_date"],
y=filtered_df["long_jobs"],
name="Long jobs",
marker=dict(color="#3A6CAC", ),
offset=0.5,
)
data = [trace1, trace2]
min_date = df["job_date"].min()
max_date = df["job_date"].max()
layout = go.Layout(
title="30 days",
barmode="stack",
xaxis=go.XAxis(
title="Date",
autorange=False,
range=[min_date, max_date],
fixedrange=True,
showgrid=True,
gridcolor="darkgrey",
),
yaxis=go.YAxis(
title="Jobs",
fixedrange=True,
showgrid=True,
gridcolor="darkgrey",
),
margin=go.Margin(l=55, r=45, b=50, t=30, pad=4),
)
fig = {
"data": data,
"layout": layout,
}
return dcc.Graph(id="queue-30d",
figure=fig,
config={'displayModeBar': False})
def graph_loss(mean_loss, loss, num_epochs, title):
flat_list1 = [item for sublist in loss for item in sublist]
flat_list2 = [item for sublist in mean_loss for item in sublist]
num_steps = len(loss[0])
bandxaxis = go.XAxis(title='Epochs',
range=[0, len(flat_list1)],
showgrid=False,
showline=False,
ticks='outside',
showticklabels=True,
mirror=True,
linewidth=2,
ticktext=[str(i + 1) for i in range(num_epochs)],
tickvals=[(i + 1) * num_steps
for i in range(num_epochs)])
plotly.offline.plot({
"data": [
go.Scatter(y=flat_list1, name='batch loss', line=dict(width=0.2)),
go.Scatter(y=flat_list2,
name='mean batch loss per epoch',
line=dict(width=5))
],
"layout":
go.Layout(xaxis=bandxaxis, yaxis=dict(title=''), title=title)
})
def ShiftTimeline(x, y, title):
"""
Timeline plot for data in shifts
Parameters
----------
x : list of numbers
description
y : list of Shifts
description
title: string
graph title
Returns
-------
fig : plotly figure
"""
trace = go.Scatter(x=[shift.start_time for shift in x], y=y)
xaxis = go.XAxis(
showgrid=True,
showline=True,
showticklabels=True,
ticktext=[
str(shift.start_time) + f' Смена {shift.order}' for shift in x
],
tickvals=[shift.start_time for shift in x],
)
layout = go.Layout(
title=title,
xaxis=xaxis,
)
return go.Figure(data=[trace], layout=layout)
def make_layout(
metadata,
title,
fixed=False,
x_axis=None,
y_axis=None,
**kwargs
):
if not y_axis:
y_axis = dict()
y_axis.setdefault('title', 'Frequency')
y_axis.setdefault('autorange', True)
y_axis = go.YAxis(**y_axis)
if not x_axis:
x_axis = dict()
x_axis.setdefault('title', 'Deviation (%)')
x_axis = go.XAxis(**x_axis)
if fixed:
x_axis['range'] = [
100.0 * metadata['x_min'],
100.0 * min(4.0, metadata['x_max'])]
x_axis['autorange'] = False
return go.Layout(title=title, xaxis=x_axis, yaxis=y_axis, **kwargs)
def plot(self, showticklabels=False):
title = self.titlestring % (self.DS.name, self.DS.clustname,
self.DS.levels)
self.shortname = self.DS.shortclustname + self.shortname
data = []
colors = get_spaced_colors(len(self.DS.clusters[self.DS.levels]))
#When number of samples is too high, need to downsample
freq = [c.shape[0] for c in self.DS.clusters[self.DS.levels]]
if sum(freq) > 300:
freq = [round((x / sum(freq)) * 300) for x in freq]
for i, c in enumerate(self.DS.clusters[self.DS.levels]):
data.append(
go.Scatter(x=np.average(c, axis=0),
y=self.DS.columns,
mode="lines",
line=dict(width=np.sqrt(freq[i]), color=colors[i]),
name="cluster " + str(i)))
xaxis = go.XAxis(title="Mean Values",
showticklabels=False,
mirror=True)
yaxis = go.YAxis(title="Dimensions",
showticklabels=showticklabels,
mirror=True)
layout = dict(title=title, xaxis=xaxis, yaxis=yaxis)
fig = dict(data=data, layout=layout)
return self.makeplot(fig, "agg/" + self.shortname)
def plot(self):
title = self.titlestring % (self.DS.name)
D = self.DS.D.as_matrix().T
d, n = D.shape
U, _, _ = np.linalg.svd(D, full_matrices=False)
xaxis = go.XAxis(
title="Eigenvectors",
ticktext=["Eigenvector %s" % i for i in range(1, d + 1)],
ticks="",
showgrid=False,
showticklabels=False,
mirror=True,
tickvals=[i for i in range(d)])
yaxis = go.YAxis(
title="Eigenvector Components",
scaleanchor="x",
showgrid=False,
ticktext=["Component %s" % i for i in range(1, d + 1)],
ticks="",
showticklabels=False,
mirror=True,
tickvals=[i for i in range(d)])
layout = dict(title=title, xaxis=xaxis, yaxis=yaxis)
trace = go.Heatmap(z=U)
data = [trace]
fig = dict(data=data, layout=layout)
return self.makeplot(fig, "agg/" + self.shortname)
def layout(ts, *args, **kwargs):
""" Make a plotly layout from timespectra attributes """
kwargs.setdefault('title', _parsenull(ts.name))
kwargs.setdefault('plot_bgcolor', '#EFECEA') #gray
kwargs.setdefault('showlegend', False)
# Map x,y title into grobs.XAxis and grobs.YAxis
xtitle = _parsenull(kwargs.pop('xtitle', ts.specunit))
ytitle = _parsenull(kwargs.pop('ytitle', ts.iunit))
kwargs['xaxis'] = grobs.XAxis(title=xtitle)
kwargs['yaxis'] = grobs.YAxis(title=ytitle)
layout = grobs.Layout(**kwargs)
axis_style = dict(
zeroline=False, # remove thick zero line
gridcolor='#FFFFFF', # white grid lines
ticks='outside', # draw ticks outside axes
ticklen=8, # tick length
tickwidth=1.5) # and width
# Can I just set these in XAxis and YAxis __init__?
layout['xaxis'].update(axis_style)
layout['yaxis'].update(axis_style)
return layout
def get_horizontal_bar_layout(
annotations, shapes,
title='',
x_axis_title='',
width='370',
height='530',
left=45, r=20, t=30, b=30,
):
return go.Layout(
title=title,
width=width,
height=height,
margin={
'pad': .5,
'l': left, 'r': r, 't': t, 'b': b,
},
xaxis=go.XAxis(
title=x_axis_title,
zeroline=False,
showticklabels=False,
fixedrange=True,
),
yaxis=go.YAxis(
fixedrange=True,
),
annotations=annotations,
shapes=shapes,
)
def plot(self, showticklabels=False):
title = self.titlestring % (self.DS.name)
xaxis = go.XAxis(
title="Observations",
ticktext=self.DS.D.index,
ticks="",
showticklabels=False,
tickvals=[i for i in range(len(self.DS.D.index))])
yaxis = go.YAxis(
title="Dimensions",
ticktext=self.DS.D.columns,
ticks="",
showticklabels=showticklabels,
tickvals=[i for i in range(len(self.DS.D.columns))])
layout = self._get_layout(title, xaxis, yaxis)
maximum = self.DS.D.max().max()
trace = go.Heatmap(
z=self.DS.D.as_matrix().T,
zmin=-maximum,
zmax=maximum,
colorscale=self.BuRd)
data = [trace]
fig = dict(data=data, layout=layout)
return self.makeplot(fig, "agg/" + self.shortname)
def plotScatter3D(df, mytitle, allDict, notebook=True):
import plotly
import plotly.graph_objs as go
statTooltips = []
doctopics = []
docdates = []
for key in df.index:
try:
statTooltips.append(tooltipText(allDict[key]))
except:
print(key, "not found")
colorDropdown = widgets.Dropdown(description='Topics:',
value=df["specGroup"][0],
options=df["specGroup"])
trace = go.Scatter3d(
x=df['pca-one'],
y=df['pca-two'],
z=df['pca-three'],
mode='markers',
marker=dict(
size=df["size"],
color=df["specGroup"],
colorscale='Viridis',
colorbar=dict(title="Topic<br>Relevance"),
# symbol=df["specGroup"], # TODO actually want Feedname
showscale=True,
opacity=0.6),
# symbol=df["specGroup"],
text=statTooltips,
textfont=dict(family="sans serif", size=8, color='crimson'),
hoverinfo='text')
# Configure the layout.
# layout = go.Layout(margin={'l': 0, 'r': 0, 'b': 0, 't': 0})
layout = go.Layout(showlegend=False,
title=mytitle,
margin={
'l': 0,
'r': 0,
'b': 50,
't': 30
},
scene=go.Scene(
xaxis=go.XAxis(title='PCA Dimension<br>Reduced X'),
yaxis=go.YAxis(title='PCA Dimension<br>Reduced Y'),
zaxis=go.ZAxis(title='PCA Dimension<br>Reduced Z')))
data = [trace]
plot_figure = go.Figure(data=data, layout=layout)
camera = dict(eye=dict(x=1.5, y=1.5, z=0.1))
plot_figure.update_layout(scene_camera=camera)
# plt.tight_layout()
# Render the plot.
pl = plotly.offline.iplot(plot_figure)
pl
if not notebook:
plotly.offline.plot(plot_figure, filename='file.html')
return trace
def prepare_graph(filename):
"""Prepare a graph to plot.
Args:
filename: Name of the .gml file.
Returns:
fig : The figure prepare for plotly.iplot function.
"""
G = InteractiveGraph(filename)
axis = dict(
showline=False,
zeroline=False,
showgrid=False,
showticklabels=False,
)
layout = dict(annotations=G.make_annotations(),
font=dict(size=15),
showlegend=False,
xaxis=go.XAxis(axis),
yaxis=go.YAxis(axis),
margin=dict(l=10, r=10, b=15, t=15),
hovermode='closest',
plot_bgcolor='rgb(248,248,248)')
data = go.Data([G.lines, G.dots])
fig = dict(data=data, layout=layout)
fig['layout'].update(annotations=G.make_annotations(G.ids, 15))
return fig
def plot_stress_meshed(mesh,stress):
"""
Plots the stress on a real mesh using plotly
:param mesh: The mesh
:param stress: The stress
"""
data = [
go.Mesh3d(
x=[0, 1, 2, 0],
y=[0, 0, 1, 2],
z=[0, 2, 0, 1],
colorbar=go.ColorBar(
title='z'
),
colorscale=[[0, 'rgb(255, 0, 0)'],
[0.5, 'rgb(0, 255, 0)'],
[1, 'rgb(0, 0, 255)']],
intensity=[0, 0.33, 0.66, 1],
i=[0, 0, 0, 1],
j=[1, 2, 3, 2],
k=[2, 3, 1, 3],
name='y',
showscale=True
)
]
layout = go.Layout(
xaxis=go.XAxis(
title='x'
),
yaxis=go.YAxis(
title='y'
)
)
fig = go.Figure(data=data, layout=layout)
py.plot(fig, filename='/home/leon/Documents/RCI/TMA4220_NumPDE/3d-mesh-tetrahedron-python')
def drDF_mul_line(df,ftg='tmp/tmp_plotly.html',m_tkAng=-20,m_dtick=5,
m_title='多周期分时数据',
xlst=['t1','t5','t15','t30','t60']):
xdat = pygo.Data([])
for xsgn in xlst:
r_xnam='r_'+xsgn
r_xnam = pygo.Scatter(
x=df.index,
y=df[xsgn],
name=xsgn,
connectgaps=True,
)
#
xdat.extend([r_xnam])
#
lay = pygo.Layout(
title=m_title,
xaxis=pygo.XAxis(
gridcolor='rgb(180, 180, 180)',
mirror='all',
showgrid=True,
showline=True,
ticks='outside',#'inside',
#
dtick=m_dtick,
tickangle=m_tkAng,
#
type='category',
categoryarray=df.index,
),
) #lay = pygo.Layout(
fig = pygo.Figure(data=xdat, layout=lay)
pyplt(fig,filename=ftg,show_link=False)
def get_vertical_bar_layout(
annotations, title='', width='370', height='400',
x_axis_title='', y_axis_title='',
left=30, r=20, t=30, b=60,
):
return go.Layout(
title=title,
width=width,
height=height,
margin={
'pad': 2,
'l': left, 'r': r, 't': t, 'b': b,
},
xaxis=go.XAxis(
title=x_axis_title,
zeroline=False,
showticklabels=True,
fixedrange=True,
),
yaxis=dict(
title=y_axis_title,
zeroline=False,
showticklabels=False,
fixedrange=True,
),
annotations=annotations,
# shapes=shapes,
)
def _plot_score_pca_matrix(self, plot_pca_matrix, n_components):
output_directory = os.path.join(self.scratch, str(uuid.uuid4()))
self._mkdir_p(output_directory)
result_file_paths = []
all_pairs = list(itertools.combinations(range(1, n_components + 1), 2))
for pair in all_pairs:
first_component = pair[0]
second_component = pair[1]
result_file_path = os.path.join(
output_directory,
'pca_score_plot_{}_{}.html'.format(first_component,
second_component))
traces = self._build_2_comp_trace(
plot_pca_matrix,
'principal_component_{}'.format(first_component),
'principal_component_{}'.format(second_component))
data = go.Data(traces)
layout = go.Layout(
xaxis=go.XAxis(title='PC{}'.format(first_component),
showline=False),
yaxis=go.YAxis(title='PC{}'.format(second_component),
showline=False))
fig = go.Figure(data=data, layout=layout)
plot(fig, filename=result_file_path)
result_file_paths.append(result_file_path)
return result_file_paths
def get_hits_per_hour(end):
data = get_line_results(end)
# Find the last date which contains data
max_time = max([d.newTime for d in data])
max_date = datetime.datetime.strptime(max_time, '%Y-%m-%d %H:%M:%S')
max_date += datetime.timedelta(minutes=30)
graph = [
go.Bar(x=[d.newTime for d in data],
y=[d.count for d in data],
marker=dict(color=get_color(end)))
]
layout = go.Layout(
autosize=True,
height=600,
title='Number of hits per hour',
plot_bgcolor='rgba(249,249,249,1)',
showlegend=False,
xaxis=go.XAxis(title='Date',
range=[max_date - datetime.timedelta(days=2),
max_date]),
yaxis=go.YAxis(title='Hits'))
return plotly.offline.plot(go.Figure(data=graph, layout=layout),
output_type='div',
show_link=False)
def plot(self):
"""Constructs a distance matrix heatmap using the :obj:`DistanceMatrix` object, in plotly.
"""
title = self.titlestring % (self.DS.name)
xaxis = go.XAxis(title=self.DS.D.index.name,
ticktext=self.DS.D.index,
ticks="",
showticklabels=False,
showgrid=False,
mirror=True,
tickvals=[i for i in range(len(self.DS.D.index))])
yaxis = go.YAxis(scaleanchor="x",
title=self.DS.D.index.name,
ticktext=self.DS.D.index,
showgrid=False,
ticks="",
showticklabels=False,
mirror=True,
tickvals=[i for i in range(len(self.DS.D.index))])
layout = dict(title=title, xaxis=xaxis, yaxis=yaxis)
trace = go.Heatmap(z=self.DS.D.as_matrix().T)
data = [trace]
fig = dict(data=data, layout=layout)
return self.makeplot(fig, "agg/" + self.shortname)
def line_per_odper_fitting_fuction(dataframe, function, filename):
"""line graph for long tail analysis. X: percentage Y: od percentage"""
# calculate new x's and y's
x_new = np.linspace(0.5, 1, 50)
y_new = function(x_new)
data_origin = go.Scatter(
x=dataframe['percentage'], # assign x as the dataframe column 'x'
y=dataframe['od_needed'],
mode='markers',
marker=go.Marker(color='rgb(255, 127, 14)'),
name='Data')
data_fitting = go.Scatter(x=x_new,
y=y_new,
mode='lines',
marker=go.Marker(color='rgb(31, 119, 180)'),
name='Fit')
data = [data_origin, data_fitting]
layout = go.Layout(
title='Coverage and OD Relationship with Polynomial Fit in Python',
plot_bgcolor='rgb(229, 229, 229)',
xaxis=go.XAxis(zerolinecolor='rgb(255,255,255)',
gridcolor='rgb(255,255,255)'),
yaxis=go.YAxis(zerolinecolor='rgb(255,255,255)',
gridcolor='rgb(255,255,255)'))
fig = go.Figure(data=data, layout=layout)
py.plot(fig, filename=filename)
def plot(self, showticklabels=False):
title = self.titlestring % (self.DS.name, self.DS.clustname,
self.DS.levels)
self.shortname = self.DS.shortclustname + self.shortname
#When number of samples is too high, need to downsample
freq = [c.shape[0] for c in self.DS.clusters[self.DS.levels]]
if sum(freq) > 500:
freq = [round((x / sum(freq)) * 500) for x in freq]
means = []
for i, c in enumerate(self.DS.clusters[self.DS.levels]):
means += [np.average(c, axis=0)] * freq[i]
X = np.column_stack(means)
print(X.shape)
trace = go.Heatmap(y=self.DS.columns[::-1],
z=np.flipud(X),
zmin=-np.max(X),
zmax=np.max(X),
colorscale=self.BuRd)
data = [trace]
xaxis = go.XAxis(title="Clusters",
showticklabels=False,
ticks="",
mirror=True,
tickvals=[i for i in range(X.shape[1])])
yaxis = go.YAxis(title="Dimensions",
showticklabels=showticklabels,
ticks="",
mirror=True)
layout = dict(title=title, xaxis=xaxis, yaxis=yaxis)
fig = dict(data=data, layout=layout)
return self.makeplot(fig, "agg/" + self.shortname)
def pcaWiki(self,file):
self.formDataPCA(file)
X_std = StandardScaler().fit_transform(self.X)
sklearn_pca = sklearnPCA(n_components=2)
Y_sklearn = sklearn_pca.fit_transform(X_std)
traces = []
for name in self.names:
trace = go.Scatter(
x=Y_sklearn[self.y==name,0],
y=Y_sklearn[self.y==name,1],
mode='markers',
name=name,
marker=go.Marker(
size=12,
line=go.Line(
color='rgba(217, 217, 217, 0.14)',
width=0.5),
opacity=0.8))
traces.append(trace)
data = go.Data(traces)
layout = go.Layout(xaxis=go.XAxis(title='PC1', showline=False),
yaxis=go.YAxis(title='PC2', showline=False))
fig = go.Figure(data=data, layout=layout)
if (self.outputType == 'file'):
print(py.plot(fig,filename='pca'))
else:
return (py.plot(fig,include_plotlyjs='False',output_type='div'))
def drDF_tick(df, ftg='tmp/tmp_plotly.html', m_title='tick数据'):
r_price = pygo.Scatter(x=df['xtim'], y=df['price'], name='price')
r_vol = pygo.Bar(
x=df['xtim'],
y=df['volume'],
name='volume',
#yaxis= 'y2'
)
lay = pygo.Layout(
title=m_title,
xaxis=pygo.XAxis(
#autorange=True,
gridcolor='rgb(180, 180, 180)',
#gridwidth=1,
dtick=5,
mirror='all',
showgrid=True,
showline=True,
ticks='outside', #'inside',
tickangle=-20,
#
type='category',
categoryarray=df.index,
),
yaxis2=pygo.YAxis(
side='right',
overlaying='y',
range=[0, max(df['volume']) * 3],
),
) #lay = pygo.Layout(
xdat = pygo.Data([r_price, r_vol])
fig = pygo.Figure(data=xdat, layout=lay)
pyplt(fig, filename=ftg, show_link=False)
def drDF_mul_xsub(df,
ftg='tmp/tmp_plotly.html',
m_tkAng=-20,
m_dtick=5,
m_title='多周期分时数据',
xlst=['t1', 't5', 't15', 't30', 't60']):
r_vol = pygo.Bar(
x=df.index, #df['xtim'],
y=df['volume'],
name='volume',
yaxis='y2',
opacity=0.6,
marker=dict(
color='rgb(158,202,225)',
line=dict(
color='rgb(8,48,107)',
width=1.5,
),
),
) #r_vol
# vertical_spacing
fig = tools.make_subplots(rows=2,
cols=1,
shared_xaxes=True,
horizontal_spacing=0.01)
#
for xsgn in xlst:
r_xnam = 'r_' + xsgn
r_xnam = pygo.Scatter(
x=df.index,
y=df[xsgn],
name=xsgn,
connectgaps=True,
)
#
#xdat.extend([r_xnam])
fig.append_trace(r_xnam, 1, 1)
#
fig['layout'].update(
#lay = pygo.Layout(
title=m_title,
xaxis=pygo.XAxis(
gridcolor='rgb(180, 180, 180)',
mirror='all',
showgrid=True,
showline=True,
ticks='outside', #'inside',
#
dtick=m_dtick,
tickangle=m_tkAng,
#
type='category',
categoryarray=df.index,
),
) #lay = pygo.Layout(
#xdat = pygo.Data([r_t1,r_t5,r_t15,r_t30,r_t60])
#fig = pygo.Figure(data=xdat, layout=lay)
fig.append_trace(r_vol, 2, 1)
pyplt(fig, filename=ftg, show_link=False)
def drDF_tickX(df,
ftg='tmp/tmp_plotly.html',
m_title='tick数据',
sgnTim='xtim',
sgnPrice='price'):
r_price = pygo.Scatter(x=df[sgnTim], y=df[sgnPrice], name=sgnPrice)
lay = pygo.Layout(
title=m_title,
xaxis=pygo.XAxis(
#autorange=True,
gridcolor='rgb(180, 180, 180)',
#gridwidth=1,
dtick=5,
mirror='all',
showgrid=True,
showline=True,
ticks='outside', #'inside',
tickangle=-20,
#
type='category',
categoryarray=df.index,
),
) #lay = pygo.Layout(
xdat = pygo.Data([r_price])
fig = pygo.Figure(data=xdat, layout=lay)
pyplt(fig, filename=ftg, show_link=False)
def pca(self,winSize):
data = np.zeros((len(self.data),len(self.data['FUNC'][winSize])))
i=0
for dEl in sorted(self.data):
self.data[dEl][winSize] = normalizeMaxMin(self.data[dEl][winSize])
data[i] = self.data[dEl][winSize]
i+=1
X_std = StandardScaler().fit_transform(np.transpose(data))
sklearn_pca = sklearnPCA(n_components=2)
Y_sklearn = sklearn_pca.fit_transform(X_std)
traces = []
trace = go.Scatter(
x=Y_sklearn[:,0],
y=Y_sklearn[:,1],
mode='markers',
marker = go.Marker(
size=12,
line= go.Line(
color='rgba(217, 217, 217, 0.14)',
width=0.5),
opacity=0.8))
traces.append(trace)
data = go.Data(traces)
layout = go.Layout(xaxis = go.XAxis(title='PC1', showline=False),
yaxis = go.YAxis(title='PC2', showline=False))
fig = go.Figure(data=data, layout=layout)
if self.outputType=='file':
print(py.plot(fig, filename='pca.html'))
else:
return py.plot(fig, output_type='div')
def plot3Dgraph(self, fig, x, y, z):
import plotly.graph_objs as go
surface = go.Surface(x=x, y=y, z=z)
data = go.Data([surface])
layout = go.Layout(
title='Parametric Plot',
scene=go.Scene(xaxis=go.XAxis(gridcolor='rgb(255, 255, 255)',
zerolinecolor='rgb(255, 255, 255)',
showbackground=True,
backgroundcolor='rgb(230, 230,230)'),
yaxis=go.YAxis(gridcolor='rgb(255, 255, 255)',
zerolinecolor='rgb(255, 255, 255)',
showbackground=True,
backgroundcolor='rgb(230, 230,230)'),
zaxis=go.ZAxis(
gridcolor='rgb(255, 255, 255)',
zerolinecolor='rgb(255, 255, 255)',
showbackground=True,
backgroundcolor='rgb(230, 230,230)')))
fig = go.Figure(data=data,
layout=go.Layout(title='Offline Plotly Testing',
width=800,
height=500,
xaxis=dict(title='X-axis'),
yaxis=dict(title='Y-axis')))
plot(fig, show_link=False)
def plot_diff(ref_df, dist_df, t='', xlabel='', ylabel='', col='msm'):
import plotly.graph_objs as go
from plotly.offline import iplot
plot_df = dist_df.join(ref_df, rsuffix='_ref', how='inner').dropna()
text_tmpl = ('{}{}<br>X: moc={:.3f} spat={:.3f} spec={:.3f}'
'<br>Y: moc={:.3f} spat={:.3f} spec={:.3f}')
traces = []
adducts = plot_df.index.get_level_values('adduct').unique()
for adduct in adducts:
df = plot_df.xs(adduct, level='adduct')
txt = df.reset_index().apply(
lambda r: text_tmpl.format(r.sf, adduct, r.moc_ref, r.spat_ref, r.
spec_ref, r.moc, r.spat, r.spec),
axis=1,
)
if df.empty:
continue
traces.append(
go.Scatter(
x=df['{}_ref'.format(col)],
y=df['{}'.format(col)],
text=txt,
mode='markers',
name=adduct,
))
data = go.Data(traces)
fig = go.Figure(
data=data,
layout=go.Layout(
autosize=False,
height=500,
hovermode='closest',
title=t + ' \'{}\' values'.format(col),
width=500,
xaxis=go.XAxis(
autorange=False,
range=[-0.05675070028979684,
1.0323925590539844], # what the f**k is this?
title=xlabel,
type='linear',
),
yaxis=go.YAxis(
autorange=False,
range=[-0.0015978995361995152,
1.0312345837176764], # what the f**k is this?
title=ylabel,
type='linear',
),
),
)
iplot(fig, filename='ref_dist_msm_scatter')
tmp_df = plot_df.dropna()
return tmp_df
def dist_plot(df,
groupby=None,
val=None,
bin_size=1,
title=None,
show_hist=True,
show_kde=True,
show_rug=True,
show_legend=True,
figsize=None,
outfile=None,
xlabel=None,
ylabel=None):
if groupby is None:
fig = FF.create_distplot([df[c] for c in df.columns],
df.columns.values.tolist(),
bin_size=bin_size,
show_rug=show_rug,
show_curve=show_kde)
else:
groups = sorted(df[groupby].unique().tolist(), reverse=True)
data = []
if val is None:
val = df.columns.drop(groupby)[
0] # choose first non-groupby column
for group in groups:
mask = df[groupby] == group
data.append(df.loc[mask, val])
fig = FF.create_distplot(data,
groups,
bin_size=bin_size,
show_hist=show_hist,
show_rug=show_rug,
show_curve=show_kde)
fig['layout'].update(showlegend=show_legend)
if title:
fig['layout'].update(title=title)
if xlabel:
fig['layout'].update(xaxis=go.XAxis(title=xlabel))
if ylabel:
fig['layout'].update(yaxis=go.YAxis(title=ylabel))
if figsize and len(figsize) == 2:
fig['layout'].update(width=figsize[0])
fig['layout'].update(height=figsize[1])
ol.iplot(fig, show_link=False)
# write figure to HTML file
if outfile:
print('Exporting copy of figure to %s...' % outfile)
ol.plot(fig, auto_open=False, filename=outfile)
def drDF_mul_xline(df,
ftg='tmp/tmp_plotly.html',
m_tkAng=-20,
m_dtick=5,
m_title='多周期分时数据',
xlst=['t1', 't5', 't15', 't30', 't60']):
r_vol = pygo.Bar(
x=df.index, #df['xtim'],
y=df['volume'],
name='volume',
yaxis='y2',
opacity=0.6,
marker=dict(
color='rgb(158,202,225)',
line=dict(
color='rgb(8,48,107)',
width=1.5,
),
),
) #r_vol
#
xdat = pygo.Data([r_vol])
for xsgn in xlst:
r_xnam = 'r_' + xsgn
r_xnam = pygo.Scatter(
x=df.index,
y=df[xsgn],
name=xsgn,
connectgaps=True,
)
#
xdat.extend([r_xnam])
#
lay = pygo.Layout(
title=m_title,
xaxis=pygo.XAxis(
gridcolor='rgb(180, 180, 180)',
mirror='all',
showgrid=True,
showline=True,
ticks='outside', #'inside',
#
dtick=m_dtick,
tickangle=m_tkAng,
#
type='category',
categoryarray=df.index,
),
yaxis2=pygo.YAxis(
side='right',
overlaying='y',
range=[0, max(df['volume']) * 3],
),
) #lay = pygo.Layout(
#xdat = pygo.Data([r_t1,r_t5,r_t15,r_t30,r_t60])
fig = pygo.Figure(data=xdat, layout=lay)
pyplt(fig, filename=ftg, show_link=False)
def cluster_test():
dataSet = getDataSetFromDatabase()
labels = cluster(dataSet)
# transpose to work with Plotly-format (don't remember if it is sklear.cluster or plotly that is counterintuitive)
dataToChart = dataSet.transpose()
# create multi dimensional array of data by label
segmentedData = [[[] for _ in xrange(3)] for _ in xrange(numClusters)]
for num, label in enumerate(labels):
print (str(num) + ' ' + str(label))
segmentedData[label][0].append(dataToChart[0][num])
segmentedData[label][1].append(dataToChart[1][num])
segmentedData[label][2].append(dataToChart[2][num])
if debug:
print(segmentedData)
# create traces for plotly
traces = []
baseColor = 100
i = 0
while i < numClusters:
trace = go.Scatter3d(
x=segmentedData[i][0],
y=segmentedData[i][1],
z=segmentedData[i][2],
mode='markers',
marker=dict(
size=12,
line=dict(
color='rgba(baseColor+(i*2), baseColor+(i*2), baseColor+(i*2), 0.14)',
width=0.5
),
opacity=0.8
),
# @todo: fix names list for plotly
#text=names
)
traces.append(trace)
i+=1
layout = go.Layout(
scene=go.Scene(
xaxis=go.XAxis(title='Carbs', tickprefix='Carbs ', showtickprefix='first'),
yaxis=go.YAxis(title='Fat', tickprefix='Fat ', showtickprefix='first'),
zaxis=go.ZAxis(title='Protein', tickprefix='Protein ', showtickprefix='first')
),
height = 800,
width = 800,
)
fig = go.Figure(data=traces, layout=layout)
graphJSON = json.dumps(fig, cls=plotly.utils.PlotlyJSONEncoder)
return render_template('cluster-test.html', graphJSON=graphJSON)
