def GetExec(self, event):
#Tool Executable
for b in self.resBoxes.values():
b.Show(False)
a = self.resBoxes['ax'].GetSize()
self.plotter = mpl.PlotNotebook(self.resBoxes['ax'],
pos=(0, 0),
size=(a[0], a[1]))
if self.rec == []:
query = self.seqInput.GetValue()
if not query == "":
try:
q = query.split('>')
for seq in q:
s = seq.split('\n')
seqID = s[0]
st = ''
for l in s[1:]:
st += l
self.rec.append(
SeqRecord(st,
id=seqID,
name=seqID,
description=seqID))
except:
self.seqInput.clear()
self.seqInput.write('Incorrect Formatting')
else:
self.seqInput.write('enter alignment!')
self.plotter.remove()
self.plugins[self.name].GetExec(self, self.rec)
def DoView(self, event):
self.plot = mpl.PlotNotebook(self.bigPanel,
pos=(-25, 70),
size=(self.bPSize[0] - 232,
self.bPSize[1] - 95))
c = self.combo.GetSelection()
axes1 = spg.SSEPlot(self.cur[c].seq, self.plot)
self.plot.resize([3.05 / 244, 3.05 / 244])
def GetExec(self, frame, coverPanel, seqRec, frameObjs):
self.frame = frame
self.rec = seqRec
self.coverPanel = coverPanel
self.frameObjs = frameObjs
self.GbInit()
self.ps = self.coverPanel.GetSize()
self.plotter = mpl.PlotNotebook(self.coverPanel,
size=self.ps,
pos=(0, 0))
self.plotter.Show(False)
def GetExec(self, frame, coverPanel, rec, frameObjs):
self.frame = frame
self.rec = rec[0]
self.coverPanel = coverPanel
self.frameObjs = frameObjs
self.GbInit()
cs = self.coverPanel.GetSize()
self.plotter = mpl.PlotNotebook(self.coverPanel,
size=(cs[1], cs[1]),
pos=((cs[0] - cs[1]) / 2, 0))
self.plotter.Show(False)
def GetExec(self, rec):
self.rec = rec[0][0]
self.plotter = mpl.PlotNotebook(self.coverPanel,
size=(self.bPSize[0] - 105,
self.bPSize[1]),
pos=(0, 0))
self.coverPanel.SetBackgroundColour('GRAY')
self.coverPanel.SetForegroundColour('WHITE')
self.plotter.Show(True)
self.axes1 = self.plotter.add('figure 1').gca()
self.DoDraw(wx.EVT_IDLE)
def GetExec(self, rec, frame, coverPanel, frSize, pdbMat):
self.rec = rec
self.frame = frame
self.coverPanel = coverPanel
self.pdbMat = pdbMat
self.frSize = frSize
self.bPSize = self.coverPanel.GetSize()
self.plotter = mpl.PlotNotebook(self.coverPanel,
size=(self.bPSize[0], self.bPSize[1]),
pos=(0, 0))
self.coverPanel.SetBackgroundColour('GRAY')
self.coverPanel.SetForegroundColour('WHITE')
self.plotter.Show(True)
self.axes1 = self.plotter.add('figure 1').gca()
self.DoDraw(wx.EVT_IDLE)
def GetExec(self, f, coverPanel, rec, geMat, colorList):
self.rec = rec
self.coverPanel = coverPanel
self.geMat = geMat
self.bPSize = self.coverPanel.GetSize()
self.plotter = mpl.PlotNotebook(self.coverPanel,
size = (self.bPSize[1], self.bPSize[1] * 1.08),
pos = ((self.bPSize[0]-self.bPSize[1])/2,
-self.bPSize[1] * .08))
self.plotter.Show(True)
self.axes1 = self.plotter.add('figure 1').gca()
colMat = GetExec(self.rec, geMat, 'tri')
self.Z3 = np.transpose(np.array(colMat))
plt.spectral()
self.DoDraw()
return self.geMat
def PaneInit(self):
self.panes = []
self.plots = []
self.texts = []
for i, c in enumerate(self.cur):
self.texts.append(
wx.StaticText(self.coverPanel,
-1,
pos=(10, 150 * i + 15),
label=''))
pane = wx.Panel(self.coverPanel,
-1,
size=(self.bPSize[0] - 294, 100),
pos=(10, 150 * i + 40),
style=wx.SIMPLE_BORDER)
t = mpl.PlotNotebook(pane,
pos=(-25, 0),
size=(self.bPSize[0] - 269, 100))
self.panes.append(pane)
self.plots.append(t)
def CoverInit(self):
self.coverPanel = wx.Panel(self.bigPanel,
-1,
pos=(0, 0),
size=(self.bPSize[0] - 277,
self.bPSize[1] - 8))
self.coverPanel.Show(True)
fs = self.frame.GetSize()
self.frameBox = wx.ScrolledWindow(self.frame,
-1,
pos=(2, 80),
size=(fs[0] - 10, fs[1] - 120),
style=wx.VSCROLL | wx.BORDER_SUNKEN)
self.frameBox.SetBackgroundColour('WHITE')
self.frameBox.Show(True)
self.plotter = mpl.PlotNotebook(self.coverPanel,
pos=(-50, 0),
size=(self.bPSize[0] - 227,
self.bPSize[1] - 8))
self.coverPanel.SetBackgroundColour('GRAY')
self.axes1 = self.plotter.add('figure 1').gca()
def GetExec(self, rec, frame, coverPanel, frSize, pdbMat):
self.rec = []
for r in rec:
self.rec.append([str(r[1] + '/' + r[0])])
self.pdbMat = pdbMat
self.frame = frame
self.coverPanel = coverPanel
self.coverPanel.SetBackgroundColour('GRAY')
self.coverPanel.SetForegroundColour('WHITE')
self.frSize = frSize
self.bPSize = self.coverPanel.GetSize()
self.plotter = mpl.PlotNotebook(
self.coverPanel,
size=(self.bPSize[1], self.bPSize[1]),
pos=((self.bPSize[0] - self.bPSize[1]) / 2, 0))
self.plotter.Show(True)
self.SComboInit()
self.RCombosInit()
self.SetLen()
self.SetOrders()
self.DoDraw(wx.EVT_IDLE)
def Init(self, parent, bigPanel, colorList):
self.bigPanel = bigPanel
self.bPSize = self.bigPanel.GetSize()
self.colorList = colorList
ps = (self.bPSize[0] / 2., self.bPSize[1] * 220. / 247.)
self.plotter = mpl.PlotNotebook(self.bigPanel,
size=ps,
pos=(self.bPSize[0] * .23, 10))
self.boxer = wx.Panel(self.bigPanel,
-1,
style=wx.NO_BORDER,
pos=(self.bPSize[0] * 0.735,
self.bPSize[1] / 2 - 30),
size=(90, 60))
self.boxer.SetBackgroundColour('NAVY')
self.textFrameSize = wx.StaticText(self.boxer,
-1,
pos=(10, 5),
label="Window Size:")
self.textFrameSize.SetForegroundColour('WHITE')
self.frSize = wx.SpinCtrl(self.boxer, -1, size=(75, -1), pos=(10, 30))
self.bigPanel.Bind(wx.EVT_SPINCTRL, self.OnFrSize)
self.frSize.SetValue(10)
self.textSeq2 = wx.StaticText(self.bigPanel,
-1,
pos=(15, self.bPSize[1] / 2.),
label="Sequence 2:")
self.textSeq2.SetBackgroundColour(self.colorList['ViewPanel']['Back'])
self.textSeq2.SetForegroundColour(self.colorList['ViewPanel']['Fore'])
self.textSeq1 = wx.StaticText(self.bigPanel,
-1,
pos=(15, self.bPSize[1] / 6.),
label="Sequence 1:")
self.textSeq1.SetBackgroundColour(self.colorList['ViewPanel']['Back'])
self.textSeq1.SetForegroundColour(self.colorList['ViewPanel']['Fore'])
self.boxer.Show(False)
self.plotter.Show(False)