def mesh_ribbon():
cmd.hide('everything')
glb.update()
cmd.map_new('map', "gaussian", "0.75", 'all')
glb.procolor(None,show_all=('lines','ribbon'),color_all='red')
cmd.isomesh('map1', 'map', '1')
cmd.color('purple','map1')
def mesh_ribbon():
cmd.hide('everything')
glb.update()
cmd.map_new('map', "gaussian", "0.75", 'all')
glb.procolor(None, show_all=('lines', 'ribbon'), color_all='red')
cmd.isomesh('map1', 'map', '1')
cmd.color('purple', 'map1')
def chain_contact():
def chain_contact_loop(c,skip,chainPullList):
d = 0
l = c + 1
while len(chainPullList) > l and (26-d) >= 0:
cmd.select('chain_contact','%s w. 5 of %s'%(chainPullList[d],chainPullList[c+1]),enable=0,quiet=1,merge=1)
cmd.select('chain_contact','%s w. 5 of %s'%(chainPullList[c+1],chainPullList[d]),enable=0,quiet=1,merge=1)
d += 1
l += 1
while d == (c+1) or d in skip:
d += 1
glb.update()
cmd.hide('everything')
cmd.show('mesh', 'all')
cmd.color('gray40', 'all')
objects = cmd.get_names('all')
chainPullList = []
for i in cmd.get_chains(quiet=1):
chainPullList.append('Chain-'+i)
if len(chainPullList) < 2:
showinfo('Notice','There needs to be two or more chains to run this functions.')
return False
c = 0
skip = []
while c < (len(chainPullList)-1) and c < 26:
skip.append(c+1)
chain_contact_loop(c,skip,chainPullList)
c += 1
glb.procolor('chain_contact','mesh','cpk',None)
cmd.delete('chain_contact')
return chainPullList
def color_sel(tag):
if tag == 'Red':
cmd.color('red', glb.SELE)
elif tag == 'Green':
cmd.color('green', glb.SELE)
elif tag == 'Orange':
cmd.color('orange', glb.SELE)
elif tag == 'Yellow':
cmd.color('yellow', glb.SELE)
elif tag == 'Blue':
cmd.color('blue', glb.SELE)
elif tag == 'Violet':
cmd.color('violet', glb.SELE)
elif tag == 'CPK':
glb.procolor(selection=glb.SELE,
show_selection='sticks',
color_selection='cpk',
show_all=None)
elif tag == 'Other':
color = askcolor(title="Selection Color Chooser")
clr = str(color[1])
newcolor = 'newcolor%s' % glb.incnewcolor()
if clr != None:
cmd.set_color(
newcolor,
([int(n, 16) for n in (clr[1:3], clr[3:5], clr[5:7])]))
cmd.color(newcolor, glb.SELE)
def surfinglines():
cmd.hide('everything')
glb.update()
cmd.map_new('map', "gaussian", "0.75", 'all')
glb.procolor(None,show_all='lines')
cmd.isosurface('map1', 'map', '1')
cmd.color('orange', "map1")
cmd.set('transparency', '0.4')
cmd.set('ambient', '0.45')
def surfinglines():
cmd.hide('everything')
glb.update()
cmd.map_new('map', "gaussian", "0.75", 'all')
glb.procolor(None, show_all='lines')
cmd.isosurface('map1', 'map', '1')
cmd.color('orange', "map1")
cmd.set('transparency', '0.4')
cmd.set('ambient', '0.45')
def premisc(tag):
if tag == 'Hetero Atoms':
show_hetero()
elif tag == 'Chain Contacts':
chain_contact()
elif tag == 'DNA & RNA':
show_dna_rna()
elif tag == 'CPK':
glb.procolor()
elif tag == 'Ball & Stick':
ball_and_stick()
def premisc(tag):
if tag == 'Hetero Atoms':
show_hetero()
elif tag == 'Chain Contacts':
chain_contact()
elif tag == 'DNA & RNA':
show_dna_rna()
elif tag == 'CPK':
glb.procolor()
elif tag == 'Ball & Stick':
ball_and_stick()
def view_polarity():
glb.update()
objects = cmd.get_names('all')
if 'protein' in objects:
cmd.show('surface', 'protein')
cmd.color('red', 'resn ALA+ILE+LEU+MET+PHE+PRO+TRP+VAL')
cmd.color('blue', 'resn THR+SER+ARG+ASN+ASP+GLN+GLU+HIS+LYS')
cmd.show('spheres', 'het')
cmd.color('green', 'het')
cmd.set('cartoon_ring_mode', '1')
if 'dna' in objects:
cmd.show('cartoon', 'resn %s' % (glb.DNASTR))
glb.procolor(glb.DNASTR, 'cartoon', 'cpk', None)
showinfo('Info', 'Red = Hydrophobic\nBlue = Hydrophilic')
def view_polarity():
glb.update()
objects = cmd.get_names('all')
if 'protein' in objects:
cmd.show('surface', 'protein')
cmd.color('red', 'resn ALA+ILE+LEU+MET+PHE+PRO+TRP+VAL')
cmd.color('blue', 'resn THR+SER+ARG+ASN+ASP+GLN+GLU+HIS+LYS')
cmd.show('spheres', 'het')
cmd.color('green', 'het')
cmd.set('cartoon_ring_mode' , '1')
if 'dna' in objects:
cmd.show('cartoon', 'resn %s'%(glb.DNASTR))
glb.procolor(glb.DNASTR,'cartoon','cpk',None)
showinfo('Info', 'Red = Hydrophobic\nBlue = Hydrophilic')
def chain_contact():
def chain_contact_loop(c, skip, chainPullList):
d = 0
l = c + 1
while len(chainPullList) > l and (26 - d) >= 0:
cmd.select('chain_contact',
'%s w. 5 of %s' %
(chainPullList[d], chainPullList[c + 1]),
enable=0,
quiet=1,
merge=1)
cmd.select('chain_contact',
'%s w. 5 of %s' %
(chainPullList[c + 1], chainPullList[d]),
enable=0,
quiet=1,
merge=1)
d += 1
l += 1
while d == (c + 1) or d in skip:
d += 1
glb.update()
cmd.hide('everything')
cmd.show('mesh', 'all')
cmd.color('gray40', 'all')
objects = cmd.get_names('all')
chainPullList = []
for i in cmd.get_chains(quiet=1):
chainPullList.append('Chain-' + i)
if len(chainPullList) < 2:
showinfo(
'Notice',
'There needs to be two or more chains to run this functions.')
return False
c = 0
skip = []
while c < (len(chainPullList) - 1) and c < 26:
skip.append(c + 1)
chain_contact_loop(c, skip, chainPullList)
c += 1
glb.procolor('chain_contact', 'mesh', 'cpk', None)
cmd.delete('chain_contact')
return chainPullList
def color_sel(tag):
if tag == 'Red':
cmd.color('red', glb.SELE)
elif tag == 'Green':
cmd.color('green', glb.SELE)
elif tag == 'Orange':
cmd.color('orange', glb.SELE)
elif tag == 'Yellow':
cmd.color('yellow', glb.SELE)
elif tag == 'Blue':
cmd.color('blue', glb.SELE)
elif tag == 'Violet':
cmd.color('violet', glb.SELE)
elif tag == 'CPK':
glb.procolor(selection=glb.SELE, show_selection='sticks',
color_selection='cpk', show_all=None)
elif tag == 'Other':
color = askcolor(title = "Selection Color Chooser")
clr = str(color[1])
newcolor = 'newcolor%s' % glb.incnewcolor()
if clr != None:
cmd.set_color(newcolor,
([int(n, 16) for n in (clr[1:3], clr[3:5], clr[5:7])]))
cmd.color(newcolor, glb.SELE)
def show_hetero():
glb.update()
objects = cmd.get_names('all')
if 'ligands' in objects:
if 'protein' in objects:
cmd.show('cartoon', 'protein')
cmd.set('cartoon_transparency', '0.7', 'protein')
if 'dna' in objects:
glb.procolor('dna', 'sticks', 'cpk', None)
if 'rna' in objects:
glb.procolor('rna', 'sticks', 'cpk', None)
glb.procolor('ligands around 6', 'sticks', 'cpk', 'cartoon')
glb.procolor('ligands', 'spheres', 'orange', None)
cmd.set('sphere_transparency', '0.1', 'ligands')
cmd.set('stick_radius', '0.3', 'ligands around 6')
cmd.set('stick_transparency', '0.1', 'ligands around 6')
else:
showinfo("Error", "There are no hetero atoms in this molecule.")
def show_hetero():
glb.update()
objects = cmd.get_names('all')
if 'ligands' in objects:
if 'protein' in objects:
cmd.show('cartoon', 'protein')
cmd.set('cartoon_transparency', '0.7', 'protein')
if 'dna' in objects:
glb.procolor('dna','sticks','cpk',None)
if 'rna' in objects:
glb.procolor('rna','sticks','cpk',None)
glb.procolor('ligands around 6','sticks','cpk','cartoon')
glb.procolor('ligands','spheres','orange',None)
cmd.set('sphere_transparency', '0.1', 'ligands')
cmd.set('stick_radius', '0.3', 'ligands around 6')
cmd.set('stick_transparency', '0.1', 'ligands around 6')
else:
showinfo("Error", "There are no hetero atoms in this molecule.")
def cartoon_view(cartoon=None):
glb.update()
cmd.hide('all')
objects = cmd.get_names('all')
if 'protein' in objects:
cmd.show('cartoon', 'protein')
cmd.color("red", "ss h")
cmd.color("yellow", "ss s")
cmd.color("cyan", "ss l+\'\'")
if 'ligands' in objects:
glb.procolor('ligands','spheres','orange',None)
if 'dna' in objects:
glb.procolor('dna','sticks','cpk',None)
if 'rna' in objects:
glb.procolor('rna','sticks','cpk',None)
if cartoon == 'putty':
try:
cmd.cartoon('putty', 'protein')
except:
showinfo('Error', 'Putty is not supported by this version of PyMol')
else:
cmd.set('cartoon_ring_mode' , '1')
def cartoon_view(cartoon=None):
glb.update()
cmd.hide('all')
objects = cmd.get_names('all')
if 'protein' in objects:
cmd.show('cartoon', 'protein')
cmd.color("red", "ss h")
cmd.color("yellow", "ss s")
cmd.color("cyan", "ss l+\'\'")
if 'ligands' in objects:
glb.procolor('ligands', 'spheres', 'orange', None)
if 'dna' in objects:
glb.procolor('dna', 'sticks', 'cpk', None)
if 'rna' in objects:
glb.procolor('rna', 'sticks', 'cpk', None)
if cartoon == 'putty':
try:
cmd.cartoon('putty', 'protein')
except:
showinfo('Error',
'Putty is not supported by this version of PyMol')
else:
cmd.set('cartoon_ring_mode', '1')
def growProtein():
cmd.mstop()
cmd.mclear()
cmd.mset()
glb.update()
objects = cmd.get_names('all')
if 'protein' in objects:
cmd.bg_color('black')
# create the objects to be used in this movie
cmd.create('helix', 'ss h and protein')
cmd.create('sheets', 'ss s and protein')
cmd.create('surface', objects[0])
cmd.mset('1', '1400')
# dna and rna will be represented as sticks
# to make them stand out from the protein
if 'dna' in objects:
glb.procolor('dna','sticks','cpk',None)
if 'rna' in objects:
glb.procolor('rna','sticks','cpk',None)
# coloring the protein and secondary structures
cmd.color('white', 'protein')
cmd.color('purple', 'helix')
cmd.color('teal', 'sheets')
cmd.cartoon('loop', 'protein')
cmd.cartoon('automatic', 'helix')
cmd.cartoon('automatic', 'sheets')
cmd.hide('all')
cmd.show('cartoon', 'protein')
#cmd.mdo(1,'hide cartoon, helix; hide cartoon, sheets;')
cmd.util.mrock('2', '200', '90', '1', '1')
cmd.mdo(201,'show cartoon, helix;')
cmd.util.mrock('202', '400', '90', '1', '1')
cmd.mdo(401,'show cartoon, sheets;')
cmd.util.mrock('402', '600', '90', '1', '1')
if 'ligands' in objects:
cmd.color('hotpink', 'ligands')
cmd.mdo(600, 'show spheres, ligands; show sticks, ligands;'+
' set sphere_transparency = 0.5, ligands;')
cmd.util.mroll('601', '800', '1', axis = "x")
cmd.color('blue', 'surface')
cmd.mview('store', '800')
cmd.turn('z', 180)
cmd.mview('store' , '1000')
cmd.turn('z', 180)
cmd.mdo(800, 'show surface, surface; '+
'set transparency = 0.8, surface;')
cmd.mdo(850,'set transparency = 0.7, surface;')
cmd.mdo(900,'set transparency = 0.6, surface;')
cmd.mdo(950,'set transparency = 0.5, surface;')
cmd.mdo(1000,'set transparency = 0.4, surface;')
cmd.mdo(1050,'set transparency = 0.3, surface;')
cmd.mdo(1100,'set transparency = 0.2, surface;')
cmd.mdo(1150,'set transparency = 0.1, surface;')
cmd.mdo(1200,'set transparency = 0.0, surface;')
cmd.mview('store', '1200')
cmd.util.mrock('1201', '1399', '180', '1', '1')
cmd.hide('everything', 'surface')
cmd.hide('everything', 'helix')
cmd.hide('everything', 'sheets')
cmd.reset()
cmd.orient()
cmd.mdo(1400,'hide everything, all; show cartoon, protein;')
cmd.mdo(1400,'mstop')
cmd.mview('interpolate')
cmd.rewind()
def surface_stick():
'''surface over stick movie'''
glb.update()
cmd.mstop()
cmd.mclear()
cmd.mset()
cmd.mset('1', '60')
glb.procolor(None,show_all=('sticks','surface'))
cmd.mdo(1,'set transparency = 0.75, all;')
cmd.mdo(2,'set transparency = 0.7, all;')
cmd.mdo(3,'set transparency = 0.65, all;')
cmd.mdo(4,'set transparency = 0.6, all;')
cmd.mdo(5,'set transparency = 0.55, all;')
cmd.mdo(6,'set transparency = 0.5, all;')
cmd.mdo(7,'set transparency = 0.45, all;')
cmd.mdo(8,'set transparency = 0.4, all;')
cmd.mdo(9,'set transparency = 0.35, all;')
cmd.mdo(10,'set transparency = 0.3, all;')
cmd.mdo(11,'set transparency = 0.25, all;')
cmd.mdo(12,'set transparency = 0.2, all;')
cmd.mdo(13,'set transparency = 0.15, all;')
cmd.mdo(14,'set transparency = 0.1, all;')
cmd.mdo(15,'set transparency = 0.05, all;')
cmd.mdo(16,'set transparency = 0, all;')
cmd.mdo(17,'set transparency = 0, all;')
cmd.mdo(19,'set transparency = 0, all;')
cmd.mdo(20,'set transparency = 0, all;')
cmd.mdo(21,'set transparency = 0, all;')
cmd.mdo(22,'set transparency = 0, all;')
cmd.mdo(23,'set transparency = 0, all;')
cmd.mdo(24,'set transparency = 0, all;')
cmd.mdo(25,'set transparency = 0, all;')
cmd.mdo(26,'set transparency = 0, all;')
cmd.mdo(27,'set transparency = 0, all;')
cmd.mdo(28,'set transparency = 0, all;')
cmd.mdo(29,'set transparency = 0.05, all;')
cmd.mdo(30,'set transparency = 0.1, all;')
cmd.mdo(31,'set transparency = 0.15, all;')
cmd.mdo(32,'set transparency = 0.2, all;')
cmd.mdo(33,'set transparency = 0.25, all;')
cmd.mdo(34,'set transparency = 0.3, all;')
cmd.mdo(35,'set transparency = 0.35, all;')
cmd.mdo(36,'set transparency = 0.4, all;')
cmd.mdo(37,'set transparency = 0.45, all;')
cmd.mdo(38,'set transparency = 0.5, all;')
cmd.mdo(39,'set transparency = 0.55, all;')
cmd.mdo(40,'set transparency = 0.6, all;')
cmd.mdo(41,'set transparency = 0.65, all;')
cmd.mdo(42,'set transparency = 0.7, all;')
cmd.mdo(43,'set transparency = 0.75, all;')
cmd.mdo(44,'set transparency = 0.8, all;')
cmd.mdo(45,'set transparency = 0.85, all;')
cmd.mdo(46,'set transparency = 0.9, all;')
cmd.mdo(47,'set transparency = 0.9, all;')
cmd.mdo(48,'set transparency = 0.9, all;')
cmd.mdo(49,'set transparency = 0.85, all;')
cmd.mdo(50,'set transparency = 0.85, all;')
cmd.mdo(51,'set transparency = 0.85, all;')
cmd.mdo(52,'set transparency = 0.85, all;')
cmd.mdo(53,'set transparency = 0.85, all;')
cmd.mdo(54,'set transparency = 0.85, all;')
cmd.mdo(55,'set transparency = 0.85, all;')
cmd.mdo(56,'set transparency = 0.85, all;')
cmd.mdo(57,'set transparency = 0.85, all;')
cmd.mdo(58,'set transparency = 0.85, all;')
cmd.mdo(59,'set transparency = 0.85, all;')
cmd.mdo(60,'set transparency = 0.8, all;')
def Ligand_Pull():
glb.update()
cmd.mstop()
cmd.mclear()
cmd.mset('1', '442')
cmd.hide('everything')
cmd.remove('resn HOH')
cmd.color('green', 'all')
objects = cmd.get_names('all')
if 'ligands' in objects:
cmd.set('stick_radius', '0.3')
glb.procolor('ligands around 6','sticks','cpk','cartoon')
glb.procolor('ligands','spheres','orange',None)
cmd.set("cartoon_fancy_helices", "1")
cmd.set("cartoon_fancy_sheets", "1")
cmd.set('cartoon_transparency', '0.5')
cmd.zoom()
cmd.orient()
cmd.mdo(1,'orient')
cmd.mdo(2,'translate [2,0,0],ligands;')
cmd.mdo(3,'translate [2,0,0],ligands;')
cmd.mdo(4,'translate [2,0,0],ligands;')
cmd.mdo(5,'translate [2,0,0],ligands;')
cmd.mdo(6,'translate [2,0,0],ligands;')
cmd.mdo(7,'translate [2,0,0],ligands;')
cmd.mdo(8,'translate [2,0,0],ligands;')
cmd.mdo(9,'translate [2,0,0],ligands;')
cmd.mdo(10,'translate [2,0,0],ligands;')
cmd.mdo(11,'translate [2,0,0],ligands;')
cmd.mdo(12,'translate [2,0,0],ligands;')
cmd.mdo(13,'translate [2,0,0],ligands;')
cmd.mdo(14,'translate [2,0,0],ligands;')
cmd.mdo(15,'translate [2,0,0],ligands;')
cmd.mdo(16,'translate [2,0,0],ligands;')
cmd.mdo(17,'translate [2,0,0],ligands;')
cmd.mdo(18,'translate [2,0,0],ligands;')
cmd.mdo(19,'translate [2,0,0],ligands;')
cmd.mdo(20,'translate [2,0,0],ligands;')
cmd.mdo(21,'translate [2,0,0],ligands;')
cmd.mdo(22,'translate [2,0,0],ligands;')
cmd.mdo(23,'translate [2,0,0],ligands;')
cmd.mdo(24,'translate [2,0,0],ligands;')
cmd.mdo(25,'translate [2,0,0],ligands;')
cmd.mdo(26,'translate [2,0,0],ligands;')
cmd.mdo(27,'translate [2,0,0],ligands;')
cmd.mdo(28,'translate [2,0,0],ligands;')
cmd.mdo(29,'translate [2,0,0],ligands;')
cmd.mdo(30,'translate [2,0,0],ligands;')
cmd.mdo(31,'translate [2,0,0],ligands;')
cmd.mdo(32,'translate [2,0,0],ligands;')
cmd.mdo(33,'translate [2,0,0],ligands;')
cmd.mdo(34,'translate [2,0,0],ligands;')
cmd.mdo(35,'translate [2,0,0],ligands;')
cmd.mdo(36,'translate [2,0,0],ligands;')
cmd.mdo(37,'translate [2,0,0],ligands;')
cmd.mdo(38,'translate [2,0,0],ligands;')
cmd.mdo(39,'translate [2,0,0],ligands;')
cmd.mdo(40,'translate [2,0,0],ligands;')
cmd.mdo(41,'translate [2,0,0],ligands;')
cmd.mdo(42,'orient')
cmd.util.mroll('42','222','1')
cmd.mdo(223,'translate [-2,0,0],ligands;')
cmd.mdo(224,'translate [-2,0,0],ligands;')
cmd.mdo(225,'translate [-2,0,0],ligands;')
cmd.mdo(226,'translate [-2,0,0],ligands;')
cmd.mdo(227,'translate [-2,0,0],ligands;')
cmd.mdo(228,'translate [-2,0,0],ligands;')
cmd.mdo(229,'translate [-2,0,0],ligands;')
cmd.mdo(230,'translate [-2,0,0],ligands;')
cmd.mdo(231,'translate [-2,0,0],ligands;')
cmd.mdo(232,'translate [-2,0,0],ligands;')
cmd.mdo(233,'translate [-2,0,0],ligands;')
cmd.mdo(234,'translate [-2,0,0],ligands;')
cmd.mdo(235,'translate [-2,0,0],ligands;')
cmd.mdo(236,'translate [-2,0,0],ligands;')
cmd.mdo(237,'translate [-2,0,0],ligands;')
cmd.mdo(238,'translate [-2,0,0],ligands;')
cmd.mdo(239,'translate [-2,0,0],ligands;')
cmd.mdo(240,'translate [-2,0,0],ligands;')
cmd.mdo(241,'translate [-2,0,0],ligands;')
cmd.mdo(242,'translate [-2,0,0],ligands;')
cmd.mdo(243,'translate [-2,0,0],ligands;')
cmd.mdo(244,'translate [-2,0,0],ligands;')
cmd.mdo(245,'translate [-2,0,0],ligands;')
cmd.mdo(246,'translate [-2,0,0],ligands;')
cmd.mdo(247,'translate [-2,0,0],ligands;')
cmd.mdo(248,'translate [-2,0,0],ligands;')
cmd.mdo(249,'translate [-2,0,0],ligands;')
cmd.mdo(250,'translate [-2,0,0],ligands;')
cmd.mdo(251,'translate [-2,0,0],ligands;')
cmd.mdo(252,'translate [-2,0,0],ligands;')
cmd.mdo(253,'translate [-2,0,0],ligands;')
cmd.mdo(254,'translate [-2,0,0],ligands;')
cmd.mdo(255,'translate [-2,0,0],ligands;')
cmd.mdo(256,'translate [-2,0,0],ligands;')
cmd.mdo(257,'translate [-2,0,0],ligands;')
cmd.mdo(258,'translate [-2,0,0],ligands;')
cmd.mdo(259,'translate [-2,0,0],ligands;')
cmd.mdo(260,'translate [-2,0,0],ligands;')
cmd.mdo(261,'translate [-2,0,0],ligands;')
cmd.mdo(262,'translate [-2,0,0],ligands;')
cmd.mdo(263,'orient')
cmd.util.mroll('264','442','1')
else:
showinfo('No ligands','There are no ligands in this PDB.')
def surface_cartoon():
glb.update()
cmd.mstop()
cmd.mclear()
cmd.mset('1', '60')
cmd.hide('everything')
objects = cmd.get_names('all')
glb.procolor(None,show_all=('cartoon','surface'))
cmd.set("cartoon_fancy_helices", "1")
cmd.set("cartoon_fancy_sheets", "1")
cmd.mdo(1,'set transparency = 0.75, all;')
cmd.mdo(2,'set transparency = 0.7, all;')
cmd.mdo(3,'set transparency = 0.65, all;')
cmd.mdo(4,'set transparency = 0.6, all;')
cmd.mdo(5,'set transparency = 0.55, all;')
cmd.mdo(6,'set transparency = 0.5, all;')
cmd.mdo(7,'set transparency = 0.45, all;')
cmd.mdo(8,'set transparency = 0.4, all;')
cmd.mdo(9,'set transparency = 0.35, all;')
cmd.mdo(10,'set transparency = 0.3, all;')
cmd.mdo(11,'set transparency = 0.25, all;')
cmd.mdo(12,'set transparency = 0.2, all;')
cmd.mdo(13,'set transparency = 0.15, all;')
cmd.mdo(14,'set transparency = 0.1, all;')
cmd.mdo(15,'set transparency = 0.05, all;')
cmd.mdo(16,'set transparency = 0, all;')
cmd.mdo(17,'set transparency = 0, all;')
cmd.mdo(19,'set transparency = 0, all;')
cmd.mdo(20,'set transparency = 0, all;')
cmd.mdo(21,'set transparency = 0, all;')
cmd.mdo(22,'set transparency = 0, all;')
cmd.mdo(23,'set transparency = 0, all;')
cmd.mdo(24,'set transparency = 0, all;')
cmd.mdo(25,'set transparency = 0, all;')
cmd.mdo(26,'set transparency = 0, all;')
cmd.mdo(27,'set transparency = 0, all;')
cmd.mdo(28,'set transparency = 0, all;')
cmd.mdo(29,'set transparency = 0.05, all;')
cmd.mdo(30,'set transparency = 0.1, all;')
cmd.mdo(31,'set transparency = 0.15, all;')
cmd.mdo(32,'set transparency = 0.2, all;')
cmd.mdo(33,'set transparency = 0.25, all;')
cmd.mdo(34,'set transparency = 0.3, all;')
cmd.mdo(35,'set transparency = 0.35, all;')
cmd.mdo(36,'set transparency = 0.4, all;')
cmd.mdo(37,'set transparency = 0.45, all;')
cmd.mdo(38,'set transparency = 0.5, all;')
cmd.mdo(39,'set transparency = 0.55, all;')
cmd.mdo(40,'set transparency = 0.6, all;')
cmd.mdo(41,'set transparency = 0.65, all;')
cmd.mdo(42,'set transparency = 0.7, all;')
cmd.mdo(43,'set transparency = 0.75, all;')
cmd.mdo(44,'set transparency = 0.8, all;')
cmd.mdo(45,'set transparency = 0.85, all;')
cmd.mdo(46,'set transparency = 0.9, all;')
cmd.mdo(47,'set transparency = 0.9, all;')
cmd.mdo(48,'set transparency = 0.9, all;')
cmd.mdo(49,'set transparency = 0.85, all;')
cmd.mdo(50,'set transparency = 0.85, all;')
cmd.mdo(51,'set transparency = 0.85, all;')
cmd.mdo(52,'set transparency = 0.85, all;')
cmd.mdo(53,'set transparency = 0.85, all;')
cmd.mdo(54,'set transparency = 0.85, all;')
cmd.mdo(55,'set transparency = 0.85, all;')
cmd.mdo(56,'set transparency = 0.85, all;')
cmd.mdo(57,'set transparency = 0.85, all;')
cmd.mdo(58,'set transparency = 0.85, all;')
cmd.mdo(59,'set transparency = 0.85, all;')
cmd.mdo(60,'set transparency = 0.8, all;')
