def closeDMD(self): """ Float the DMD and clear the frame buffer """ PI.py_illuminate_float() PI.py_clear_framebuffer()
def floaty(): PI.py_illuminate_float()
def mapGen(self, test_me = False): """ This function generates the mapping it: 1) loads the points to illuminate 2) generates a image for the DMD based on said coordinates 3) illuminates the image 4) takes a picture 5) copies the picture from the frame buffer 6) finds the illuminated points in the camera coordinates 7) generates a mapping to the DMD using a pseudoinverse 8) writes the mapping to class memory 9) writes the mapping to file Polonator_IlluminateFunctions is SWIGed as follows Illuminate and Hardware coordinates are mapped using the SWIG This allows you to access an array of Coordinates in C and python as follows once the IlluminateCoords_type struct is also interfaced in SWIG : new_coordArray(int size) -- creates an array of size delete_coordArray(IlluminateCoords_type * arry) -- deletes and array coordArray_get_x(IlluminateCoords_type *c_xy, int i) -- gets an value coordArray_set_x(IlluminateCoords_type *c_xy, int i, signed short int val) -- sets a value ptr_coordArray(IlluminateCoords_type *c_xy, int i) returns a pointer to an index """ """ get points for bitmap and load them SWIG style mapping_basis is just a list of points to to illuminate to generate a good and sufficient mapping basis coordinates are given as a range from -1 to 1 with 0,0 being the image center """ MF = self.MF print("STATUS:\tMappingFunctions: opening frame buffer\n") mapping_basis = open(MF.config_dir +'/mapping_basis.coordinates') print( "STATUS:\tMappingFunctions: getting list of points \ to illuminate from file\n") idx = -1 num_points = 0 for line in mapping_basis: if line[0] != '#': # '#' is reserved for comments on a separate line basis_coordinate = line.split() # tab delimited fields print(basis_coordinate) if basis_coordinate[0] == 'number': # this is the number of basis points we need to illuminate num_points = int(basis_coordinate[1]) idx = num_points # this creates the array of coordinates to illuminate points_to_illum_x = numpy.empty(idx, dtype=numpy.int32) # this is the array containing the found points on the CCD points_found_x = numpy.empty(idx, dtype=numpy.int32) points_to_illum_y = numpy.empty(idx, dtype=numpy.int32) points_found_y = numpy.empty(idx, dtype=numpy.int32) # write coordinates in reverse idx = idx - 1 print("number of Points to Illuminate: " + str(num_points)) elif (basis_coordinate[0] == 'XY') and (idx > -1): # make sure its tagged as a coordinate and the index is positive # scale to dimensions of the DMD bc_x = int( float(MF.IlluminateWidth)/2 \ *float(basis_coordinate[1]) ) \ + (float(MF.IlluminateWidth)-1)/2 bc_y = int( float(MF.IlluminateHeight)/2 \ *float(basis_coordinate[2]) ) \ + (float(MF.IlluminateHeight)-1)/2 print("read(%d,%d)\n" % (bc_x, bc_y)) points_to_illum_x[idx] = bc_x points_to_illum_y[idx] = bc_y idx = idx - 1 #end if #end if #end for """ Set up imaging """ MaestroF = MF.MaestroF MaestroF.darkfield_off() MaestroF.filter_home() MaestroF.filter_goto("spare") time.sleep(1) #MaestroF.filter_unlock() """ set up release hardware """ #self.illumInit() num_sub = 0 # keeps track of not found points data_size = 1000000 img_array = numpy.empty(data_size, dtype=numpy.uint16) #img_array_out = numpy.empty(data_size, dtype=numpy.uint16) img_array_float = numpy.zeros(data_size, dtype=numpy.float) for idx in range(num_points): # generate bitmap print("STATUS:\tMappingFunctions: clearing frame buffer\n") PI.py_clear_framebuffer() print("STATUS:\tMappingFunctions: creating mask\n") print("STATUS:\tMappingFunctions: generating one image of with ' + \ 'one pixel\n") PI.py_illuminate_point( int(points_to_illum_x[idx]),\ int(points_to_illum_y[idx]),\ MF.mask_number0) # illuminate just ONE spot print("STATUS:\tMappingFunctions: illuminating one point\n") print("illuminating (%d,%d)\n" % \ (int(points_to_illum_x[idx]), int(points_to_illum_y[idx]))) PI.py_illuminate_expose() # turn on the frame buffer #time.sleep(1) # analyze image for centroid print("STATUS:\tMappingFunctions: taking picture \ of one illuminated point\n") # take a picture and get a pointer to the picture frames = 5 for i in range(frames): PC.py_snapPtr(img_array, MF.expose,MF.gain,"spare") # sum accumulator img_array_float += img_array.astype(numpy.float) # end for # average over frames img_array_out = (img_array_float/frames).astype(numpy.uint16) img_array_float *= 0 # reset accumulator self.convertPicPNG(img_array_out, \ points_to_illum_x[idx], points_to_illum_y[idx]) # read in the config file. must be formated correctly print("STATUS:\tMappingFunctions: find illuminated point\n") # SWIGged function for finding the centroid # doing array[x:x+1] returns a pointer to an index x in an array # essentially in numpy a = points_found_x[idx:idx+1] b = points_found_y[idx:idx+1] max_val = PI.py_illuminate_spot_find(img_array_out,a,b) if max_val < 100: print("point not found") num_sub += 1 # end if else: print("found(%d,%d)" % \ (points_found_x[idx],points_found_y[idx]) ) # end else # free up memory #unload_camera_image(img_array) PI.py_clear_framebuffer() PI.py_illuminate_float() #PC.cameraClose() # also frees up image buffer memory #end for num_points -= num_sub # perform mapping operation print("STATUS:\tMappingFunctions: generating mapping\n") PC.cameraClose() # also frees up image buffer memory self.generateMapping(points_found_x, points_found_y, \ points_to_illum_x, points_to_illum_y, num_points) self.writeMappingFile() for i in range(num_points): print("illuminated(%d,%d)" % \ (points_to_illum_x[i],points_to_illum_y[i]) ) print("found(%d,%d)" % (points_found_x[i],points_found_y[i]) ) print(" ") # end for print("Finished map generation\n")