def no_match(script_name, scripts, tables):
"""
This function ...
:param script_name:
:param scripts:
:param tables:
:return:
"""
from pts.core.basics.log import setup_log
log = setup_log()
log.error("Unknown command: " + script_name)
show_all_available(scripts, tables)
def no_match(script_name, scripts, tables):
"""
This function ...
:param script_name:
:param scripts:
:param tables:
:return:
"""
from pts.core.basics.log import setup_log
log = setup_log()
log.error("Unknown command: " + script_name)
show_all_available(scripts, tables)
def multiple_matches(matches, table_matches, tables):
"""
Thisfunction ...
:param matches:
:param table_matches:
:param tables:
:return:
"""
# Show error
from pts.core.basics.log import setup_log
log = setup_log()
log.error("The command you provided is ambigious. Possible matches:")
show_possible_matches(matches, table_matches, tables)
def multiple_matches(matches, table_matches, tables):
"""
Thisfunction ...
:param matches:
:param table_matches:
:param tables:
:return:
"""
# Show error
from pts.core.basics.log import setup_log
log = setup_log()
log.error("The command you provided is ambigious. Possible matches:")
show_possible_matches(matches, table_matches, tables)
def initialize_log(config, remote=None, command_name=None):
"""
This function ...
:param config:
:parma remote:
:param command_name:
:return:
"""
# Determine the log level
level = "INFO"
if config.debug: level = "DEBUG"
if config.brief: level = "SUCCESS"
# Determine memuse flag
if hasattr(config, "memuse"): memuse = config.memuse
else: memuse = False
# Determine log path
#if args.remote is None: logfile_path = fs.join(config.log_path, time.unique_name("log") + ".txt") if config.report else None
#else: logfile_path = None
# Determine name of log file
if command_name is not None: filename = command_name
else: filename = "log"
# Determine the log file path
if remote is None: logfile_path = fs.join(config.log_path, time.unique_name(filename, separator="__") + ".txt") if config.report else None
else: logfile_path = None
# Initialize the logger
from ..core.basics.log import setup_log
log = setup_log(level=level, path=logfile_path, memory=memuse)
# Return the logger
return log
def initialize_log(config, remote=None, command_name=None):
"""
This function ...
:param config:
:parma remote:
:param command_name:
:return:
"""
# Determine the log level
level = "INFO"
if config.debug: level = "DEBUG"
if config.brief: level = "SUCCESS"
# Determine log path
#if args.remote is None: logfile_path = fs.join(config.log_path, time.unique_name("log") + ".txt") if config.report else None
#else: logfile_path = None
# Determine name of log file
if command_name is not None: filename = command_name
else: filename = "log"
# Determine the log file path
if remote is None:
logfile_path = fs.join(config.log_path,
time.unique_name(filename) +
".txt") if config.report else None
else:
logfile_path = None
# Initialize the logger
from ..core.basics.log import setup_log
log = setup_log(level=level, path=logfile_path)
# Return the logger
return log
from __future__ import absolute_import, division, print_function
# Import the relevant PTS classes and modules
from pts.core.remote.host import find_host_ids
from pts.core.remote.remote import Remote
from pts.core.tools import formatting as fmt
from pts.core.basics.log import setup_log
from pts.core.basics.configuration import parse_logging_arguments
# -----------------------------------------------------------------
config = parse_logging_arguments("hosts")
# -----------------------------------------------------------------
# Set log level in a special way
if config.debug: setup_log("DEBUG")
else: setup_log("ERROR")
# -----------------------------------------------------------------
# Loop over the hosts
for host_id in find_host_ids():
remote = Remote()
connected = remote.setup(host_id, login_timeout=15) # only try for 15 seconds
if connected: print(fmt.green + host_id + ": up" + fmt.reset)
else: print(fmt.red + host_id + ": down" + fmt.reset)
# -----------------------------------------------------------------
import matplotlib.pyplot as plt
from mpl_toolkits.axes_grid1 import ImageGrid
import numpy as np
from pts.magic.tools import plotting
from pts.core.basics.plot import MPLPlot, MPLFigure
from pts.magic.core.frame import Frame
from pts.magic.plot.imagegrid import StandardImageGridPlotter, ResidualImageGridPlotter
# -----------------------------------------------------------------
# Logging
from pts.core.basics.log import setup_log
setup_log("DEBUG")
# -----------------------------------------------------------------
# Set seed
np.random.seed(1)
# -----------------------------------------------------------------
def make_random_frame(nxpixels, nypixels=None):
"""
This function ...
:param nxpixels:
:param nypixels:
:return:
"""
from pts.evolve.optimize.optimizer import show_best
from pts.evolve.tests.TravelingSalesman.test import settings_optimize, input_optimize, eval_func
from pts.core.basics.configuration import ConfigurationDefinition, parse_arguments
from pts.core.basics.log import setup_log
# -----------------------------------------------------------------
# Create configuration definition
definition = ConfigurationDefinition()
definition.add_positional_optional("ngenerations", "positive_integer", "number of generations (steps)", 10)
# Create the configuration
config = parse_arguments("test_tsp_steps", definition)
# Set logging
log = setup_log("DEBUG")
# -----------------------------------------------------------------
evaluator_kwargs = input_optimize["evaluator_kwargs"]
# -----------------------------------------------------------------
# Determine temporary directory
path = introspection.create_temp_dir(time.unique_name("optimize"))
# Change working directory
fs.change_cwd(path)
# -----------------------------------------------------------------
# Create configuration definition
definition = ConfigurationDefinition()
# Remote hosts
definition.add_positional_optional("hosts", "host_list", "remote hosts", default=all_hosts, choices=all_host_ids)
# Flags
definition.add_flag("clusters", "show the clusters")
# Create the configuration
config = parse_arguments("remotes", definition, "Check the status of the remotes")
# -----------------------------------------------------------------
# Set log level in a special way
if config.debug: setup_log("DEBUG")
else: setup_log("ERROR")
# -----------------------------------------------------------------
# Loop over the hosts
print("")
for host in config.hosts:
# Debugging
log.debug("Connecting to remote host '" + host.id + "' ...")
# Create remote, try connecting
remote = Remote()
connected = remote.setup(host, login_timeout=10) # only try for 10 seconds
# Import the relevant PTS classes and modules
from pts.core.tools import formatting as fmt
from pts.core.tools import introspection
from pts.core.basics.configuration import ConfigurationDefinition, parse_arguments
from pts.core.basics.log import setup_log
# -----------------------------------------------------------------
definition = ConfigurationDefinition()
definition.add_flag("verbose", "verbose output", letter="v")
config = parse_arguments("count", definition)
# -----------------------------------------------------------------
# Setup log
setup_log("ERROR")
# -----------------------------------------------------------------
# Lines
nlines = 0
nlines_per_file = dict()
nlines_per_subproject = defaultdict(int)
# Modules
nmodules = 0
nmodules_per_subproject = defaultdict(int)
# Functions
nfunctions = 0
nfunctions_per_subproject = defaultdict(int)
# Import the relevant PTS classes and modules
from pts.core.tools import formatting as fmt
from pts.core.tools import introspection
from pts.core.basics.configuration import ConfigurationDefinition, parse_arguments
from pts.core.basics.log import setup_log
# -----------------------------------------------------------------
definition = ConfigurationDefinition()
definition.add_flag("verbose", "verbose output", letter="v")
config = parse_arguments("count", definition)
# -----------------------------------------------------------------
# Setup log
setup_log("ERROR")
# -----------------------------------------------------------------
# Lines
nlines = 0
nlines_per_file = dict()
nlines_per_subproject = defaultdict(int)
# Modules
nmodules = 0
nmodules_per_subproject = defaultdict(int)
# Functions
nfunctions = 0
nfunctions_per_subproject = defaultdict(int)
from pts.evolve.tests.TravelingSalesman.test import settings_optimize, input_optimize, eval_func
from pts.core.basics.configuration import ConfigurationDefinition, parse_arguments
from pts.core.basics.log import setup_log
# -----------------------------------------------------------------
# Create configuration definition
definition = ConfigurationDefinition()
definition.add_positional_optional("ngenerations", "positive_integer",
"number of generations (steps)", 10)
# Create the configuration
config = parse_arguments("test_tsp_steps", definition)
# Set logging
log = setup_log("DEBUG")
# -----------------------------------------------------------------
evaluator_kwargs = input_optimize["evaluator_kwargs"]
# -----------------------------------------------------------------
# Determine temporary directory
path = introspection.create_temp_dir(time.unique_name("optimize"))
# Change working directory
fs.change_cwd(path)
# -----------------------------------------------------------------
# Imports
from pts.magic.core.frame import Frame
from pts.magic.core.image import Image
from pts.magic.sources.finder import SourceFinder
from pts.magic.catalog.extended import ExtendedSourceCatalog
from pts.magic.sources.extractor import SourceExtractor
from pts.core.basics.log import setup_log
setup_log("DEBUG")
name = '1237678777941229794'
ra = 0.00945
dec = 5.28824
d25 = 0.42657951411792816
redshift = 0.1694
output_find_name = "output_find"
output_extract_name = "output_extract"
## Create the catalog
catalog = ExtendedSourceCatalog()
# Add the principal galaxy
# Arguments: name, ra, dec, z, galtype, alternative_names, distance, inclination, d25, major, minor, posangle, principal, companions, parent
# SET PRINCIPAL=TRUE FOR PRINCIPAL GALAXY
catalog.add_entry(name=name,
ra=ra,
dec=dec,
z=redshift,
galtype=None,
alternative_names=None,