def temporalPlot(figAxis,
trial,
pointLabel,
axis,
pointLabelSuffix=None,
color=None,
title=None,
xlabel=None,
ylabel=None,
ylim=None,
legendLabel=None,
customLimits=None):
'''
**Description :** plot descriptive statistical (average and sd corridor) gait traces from a pyCGM2.Processing.analysis.Analysis instance
:Parameters:
- `figAxis` (matplotlib::Axis )
- `trial` (ma.Trial) - a Structure item of an Analysis instance built from AnalysisFilter
:Return:
- matplotlib figure
**Usage**
.. code:: python
'''
pointLabel = pointLabel + "_" + pointLabelSuffix if pointLabelSuffix is not None else pointLabel
flag = trialTools.isTimeSequenceExist(trial, pointLabel)
if flag:
timeseq = trial.findChild(ma.T_TimeSequence, pointLabel)
lines = figAxis.plot(timeseq.data()[:, axis], '-', color=color)
if legendLabel is not None and flag: lines[0].set_label(legendLabel)
if title is not None: figAxis.set_title(title, size=8)
figAxis.tick_params(axis='x', which='major', labelsize=6)
figAxis.tick_params(axis='y', which='major', labelsize=6)
if xlabel is not None: figAxis.set_xlabel(xlabel, size=8)
if ylabel is not None: figAxis.set_ylabel(ylabel, size=8)
if ylim is not None: figAxis.set_ylim(ylim)
if flag:
for ev in trial.findChildren(ma.T_Event):
colorContext = plotUtils.colorContext(ev.context())
if ev.name() == "Foot Strike":
figAxis.axvline(x=(ev.time() - timeseq.startTime()) *
timeseq.sampleRate(),
color=colorContext,
linestyle="-")
elif ev.name() == "Foot Off":
figAxis.axvline(x=(ev.time() - timeseq.startTime()) *
timeseq.sampleRate(),
color=colorContext,
linestyle="--")
def __setData(self):
#suffixPlus = "_" + self.m_pointLabelSuffix if self.m_pointLabelSuffix!="" else ""
for i in range(0, len(self.emgs)):
label = self.emgs[i]["Label"]+"_Rectify" if self.rectify else self.emgs[i]["Label"]+"_HPF"
context = self.emgs[i]["Context"]
colorContext = plotUtils.colorContext(context)
normalActivationLabel = self.m_normalActivEmgs[i]
plot.temporalPlot(self.fig.axes[i],self.m_trial,
label,0,
color=colorContext)
plot.addTemporalNormalActivationLayer(self.fig.axes[i],self.m_trial,self.m_normalActivEmgs[i],context)
def __setData(self):
#suffixPlus = "_" + self.m_pointLabelSuffix if self.m_pointLabelSuffix!="" else ""
for i in range(0, len(self.emgs)):
label = self.emgs[i]["Label"]+"_Rectify_Env" if not self.m_normalizedEmgFlag else self.emgs[i]["Label"]+"_Rectify_Env_Norm"
context = self.emgs[i]["Context"]
colorContext = plotUtils.colorContext(context)
self.m_concretePlotFunction(self.fig.axes[i],self.m_analysis.emgStats,
label,context,0,color=colorContext)
footOff = self.m_analysis.emgStats.pst['stancePhase', context]["mean"]
plot.addNormalActivationLayer(self.fig.axes[i],self.m_normalActivEmgs[i], footOff)
def temporalPlot(figAxis,
acq,
pointLabel,
axis,
pointLabelSuffix=None,
color=None,
title=None,
xlabel=None,
ylabel=None,
ylim=None,
legendLabel=None,
customLimits=None):
'''
**Description :** plot descriptive statistical (average and sd corridor) gait traces from a pyCGM2.Processing.analysis.Analysis instance
:Parameters:
- `figAxis` (matplotlib::Axis )
- `acq` (ma.Trial) - a Structure item of an Analysis instance built from AnalysisFilter
:Return:
- matplotlib figure
**Usage**
.. code:: python
'''
pointLabel = pointLabel + "_" + pointLabelSuffix if pointLabelSuffix is not None else pointLabel
flag = btkTools.isPointExist(acq, pointLabel)
if flag:
point = acq.GetPoint(pointLabel)
lines = figAxis.plot(point.GetValues()[:, axis], '-', color=color)
appf = 1
else:
flag = btkTools.isAnalogExist(acq, pointLabel)
if flag:
analog = acq.GetAnalog(pointLabel)
lines = figAxis.plot(analog.GetValues()[:, axis], '-', color=color)
appf = acq.GetNumberAnalogSamplePerFrame()
if legendLabel is not None and flag: lines[0].set_label(legendLabel)
if title is not None: figAxis.set_title(title, size=8)
figAxis.tick_params(axis='x', which='major', labelsize=6)
figAxis.tick_params(axis='y', which='major', labelsize=6)
if xlabel is not None: figAxis.set_xlabel(xlabel, size=8)
if ylabel is not None: figAxis.set_ylabel(ylabel, size=8)
if ylim is not None: figAxis.set_ylim(ylim)
if flag:
for ev in btk.Iterate(acq.GetEvents()):
colorContext = plotUtils.colorContext(ev.GetContext())
if ev.GetLabel() == "Foot Strike":
figAxis.axvline(x=(ev.GetFrame() - acq.GetFirstFrame()) * appf,
color=colorContext,
linestyle="-")
if ev.GetLabel() == "Foot Off":
figAxis.axvline(x=(ev.GetFrame() - acq.GetFirstFrame()) * appf,
color=colorContext,
linestyle="--")