DiffusionScanIdList = ['RL_1ScanId', 'RL_2ScanId', 'RL_3ScanId', 'LR_1ScanId', 'LR_2ScanId', 'LR_3ScanId']
DiffusionScanIdDict = {'RL_1ScanId' : None, 'RL_2ScanId' : None, 'RL_3ScanId' : None, 'LR_1ScanId' : None, 'LR_2ScanId' : None, 'LR_3ScanId' : None}
DiffusionDirList = ['RL_Dir1', 'RL_Dir2', 'RL_Dir3', 'LR_Dir1', 'LR_Dir2', 'LR_Dir3']
DiffusionDirDict = {'RL_Dir1' : '95', 'RL_Dir2' : '96', 'RL_Dir3' : '97', 'LR_Dir1' : '95', 'LR_Dir2' : '96', 'LR_Dir3' : '97' }
# DiffusionSeriesIntersectList = list(set(DiffusionSeriesList) & set(SeriesList))
for j in xrange(0, len(DiffusionSeriesList)):
currDiffDesc = DiffusionSeriesList[j]
if (sessionMeta.get('Series').count(currDiffDesc) > 0):
currDiffIdx = sessionMeta.get('Series').index(currDiffDesc)
currScanId = sessionMeta.get('IDs')[currDiffIdx]
currQuality = sessionMeta.get('Quality')[currDiffIdx]
getHCP.Scan = currScanId
scanParms = getHCP.getScanParms()
scanMeta = getHCP.getScanMeta()
EchoSpacingList.append(float(scanParms.get('EchoSpacing')) * 1.0e+3)
PhaseEncodingDirList.append(scanParms.get('PhaseEncodingDir'))
# ScanIdDict['LR_2ScanId'] = '-parameter LR_2ScanId=%s ' % str(currScanId)
if (currQuality in UsableList):
DiffusionScanIdDict[DiffusionScanIdList[DiffusionSeriesList.index(currDiffDesc)]] = '-parameter %s=%s ' % (DiffusionScanIdList[DiffusionSeriesList.index(currDiffDesc)], currScanId)
else:
DiffusionScanIdDict[DiffusionScanIdList[DiffusionSeriesList.index(currDiffDesc)]] = '-parameter %s=%s ' % (DiffusionScanIdList[DiffusionSeriesList.index(currDiffDesc)], DummyScanId)
DiffusionDirDict[DiffusionDirList[DiffusionSeriesList.index(currDiffDesc)]] = 'EMPTY'
else:
DiffusionScanIdDict[DiffusionScanIdList[DiffusionSeriesList.index(currDiffDesc)]] = '-parameter %s=%s ' % (DiffusionScanIdList[DiffusionSeriesList.index(currDiffDesc)], DummyScanId)
DiffusionDirDict[DiffusionDirList[DiffusionSeriesList.index(currDiffDesc)]] = 'EMPTY'
# getSessionQuality
# getSubjectResourceMeta
# getSubjectResourcesMeta
# getSubjects
# getSubjectSessions
# getSubjectsSessions
# getURLString
# ==============================================================================
Projects = getHCP.getProjects()
getHCP.Subject = getHCP.Subjects[0]
getHCP.SubjectSessions = getHCP.getSubjectSessions()
getHCP.Session = getHCP.SubjectSessions.get("Sessions")[0]
getHCP.SessionMeta = getHCP.getSessionMeta()
ScanParms = getHCP.getScanParms()
ScanMeta = getHCP.getScanMeta()
print ScanMeta.get("URIs")[ScanMeta.get("Collections").index("NIFTI")]
writeHCP.writeFileFromURL(getHCP, ScanMeta.get("URIs")[ScanMeta.get("Collections").index("NIFTI")])
if getHCP.Server.find("intradb") != -1:
AssessorIDs = getHCP.getAssessorIDs()
AssessorFileURIList = getHCP.getAssessorOutputFile(AssessorIDs)
print getHCP.getProjects()
print getHCP.SessionId, getHCP.getSessionId()
print getHCP.Subjects
print getHCP.getSubjectSessions()
# print getHCP.getFileInfo('https://intradb.humanconnectome.org/data/projects/HCP_Phase2/subjects/192439/experiments/192439_strc/resources/Details/files/StructuralHCP.log')
# getSubjectResourceMeta
# getSubjectResourcesMeta
# getSubjects
# getSubjectSessions
# getSubjectsSessions
# getURLString
#==============================================================================
Projects = getHCP.getProjects()
getHCP.Subject = getHCP.Subjects[0]
getHCP.SubjectSessions = getHCP.getSubjectSessions()
getHCP.Session = getHCP.SubjectSessions.get('Sessions')[0]
getHCP.SessionMeta = getHCP.getSessionMeta()
ScanParms = getHCP.getScanParms()
ScanMeta = getHCP.getScanMeta()
print ScanMeta.get('URIs')[ScanMeta.get('Collections').index('NIFTI')]
writeHCP.writeFileFromURL(getHCP, ScanMeta.get('URIs')[ScanMeta.get('Collections').index('NIFTI')])
if (getHCP.Server.find('intradb') != -1):
AssessorIDs = getHCP.getAssessorIDs( )
AssessorFileURIList = getHCP.getAssessorOutputFile( AssessorIDs )
print getHCP.getProjects()
print getHCP.SessionId, getHCP.getSessionId()
print getHCP.Subjects
print getHCP.getSubjectSessions()
'RL_Dir3': '97',
'LR_Dir1': '95',
'LR_Dir2': '96',
'LR_Dir3': '97'
}
# DiffusionSeriesIntersectList = list(set(DiffusionSeriesList) & set(SeriesList))
for j in xrange(0, len(DiffusionSeriesList)):
currDiffDesc = DiffusionSeriesList[j]
if (sessionMeta.get('Series').count(currDiffDesc) > 0):
currDiffIdx = sessionMeta.get('Series').index(currDiffDesc)
currScanId = sessionMeta.get('IDs')[currDiffIdx]
currQuality = sessionMeta.get('Quality')[currDiffIdx]
getHCP.Scan = currScanId
scanParms = getHCP.getScanParms()
scanMeta = getHCP.getScanMeta()
EchoSpacingList.append(
float(scanParms.get('EchoSpacing')) * 1.0e+3)
PhaseEncodingDirList.append(
scanParms.get('PhaseEncodingDir'))
# ScanIdDict['LR_2ScanId'] = '-parameter LR_2ScanId=%s ' % str(currScanId)
if (currQuality in UsableList):
DiffusionScanIdDict[DiffusionScanIdList[
DiffusionSeriesList.
index(currDiffDesc)]] = '-parameter %s=%s ' % (
DiffusionScanIdList[DiffusionSeriesList.index(
currDiffDesc)], currScanId)
else:
