def stimonce(self):
'''
The function stimulates only once.
'''
if self.load_stim_filename is not None:
self.stimByteStream = np.load(self.load_stim_filename)
else:
stim = {}
stimlist = SpikeList([],[])
for adr, rate in self.rates:
stimlist[adr] = self.sg.poisson_generator(rate=rate,
t_stop=self.period*1000.)
stim[self.channel] = stimlist
if self.seq_export:
# translate logical -> physical
stimEvents = self.SeqChannelAddress.exportAER(stim,isi=True)
else:
multi = []
# concatenate events
for id, train in stimlist.spiketrains.iteritems():
for i, t in zip(np.repeat(id, len(train.spike_times)),
train.spike_times):
multi.append([i, t*1000])
# multiplex
try:
multi = np.r_[multi]
multi = multi[np.argsort(multi[:, 1])]
multi[:, 1] = np.concatenate([[0], np.diff(multi[:, 1])])
except IndexError:
multi = []
# create events instance
stimEvents = pyST.events(multi)
self.stimByteStream=stimEvents.get_tmadev().tostring()
self.stim_sock.send(self.stimByteStream)
def stimonce(self):
'''
The function stimulates only once.
'''
if self.load_stim_filename is not None:
self.stimByteStream = np.load(self.load_stim_filename)
else:
stim = {}
stimlist = SpikeList([], [])
for adr, rate in self.rates:
stimlist[adr] = self.sg.poisson_generator(rate=rate,
t_stop=self.period *
1000.)
stim[self.channel] = stimlist
if self.seq_export:
# translate logical -> physical
stimEvents = self.SeqChannelAddress.exportAER(stim, isi=True)
else:
multi = []
# concatenate events
for id, train in stimlist.spiketrains.iteritems():
for i, t in zip(np.repeat(id, len(train.spike_times)),
train.spike_times):
multi.append([i, t * 1000])
# multiplex
try:
multi = np.r_[multi]
multi = multi[np.argsort(multi[:, 1])]
multi[:, 1] = np.concatenate([[0], np.diff(multi[:, 1])])
except IndexError:
multi = []
# create events instance
stimEvents = pyST.events(multi)
self.stimByteStream = stimEvents.get_tmadev().tostring()
self.stim_sock.send(self.stimByteStream)
def run(self, stimulus=None, duration=None, context_manager=None):
stimulus = pyST.events(stimulus, atype='p')
stimulus_abs = stimulus.get_tmadev().astype('float')
stimulus_abs[:,1] = np.cumsum(stimulus_abs[:,1])/1e6
if duration == None and len(stimulus)>0:
duration = np.max(stimulus_abs[:,1])*1e3
if duration == None:
duration = 1.
else:
duration = float(duration)/1e3
net, M_EIP, MV_EIP = self._prepare_brian_net(stimulus_abs)
net.reinit(states=False)
print 'running virtual IFLSWTA for {0}s'.format(duration)
net.run(duration)
sp = np.array(M_EIP.spikes).reshape(-1,2)
sp[:,0]+=(2<<13) #slot 2 in text.xml TODO
sp[:,1]*=1e6 #slot 2 in text.xml TODO
return sp
def run(self, stimulus=None, duration=None, context_manager=None):
stimulus_abs = pyST.events(stimulus, atype='p', isISI=True)
stimulus_abs.set_abs_tm()
self.evn_sin = evs_in = stimulus_abs.get_adtmev().astype('float')
evs_in[:,1]*=1e-6 #brian takes seconds
if duration == None and len(stimulus_abs)>0:
duration = np.max(evs_in[:,1])
print duration
elif duration == None:
duration = 1.
else:
duration = float(duration)/1e3
net, M_EIP, MV_EIP = self._prepare_brian_net(evs_in)
self.outs = [net, M_EIP, MV_EIP]
net.reinit(states=False)
print('running virtual IFLSWTA for {0}s'.format(duration))
net.run(duration)
sp = np.array(M_EIP.spikes).reshape(-1,2)
sp[:,0]+=(2**16) #slot 2 in text.xml. THIS IS A POSSIBLE SOURCE OF TEST ERROR
sp[:,1]*=1e6
return sp
def run(self, stimulus=None, duration=None, context_manager=None):
stimulus_abs = pyST.events(stimulus, atype='p', isISI=True)
stimulus_abs.set_abs_tm()
self.evn_sin = evs_in = stimulus_abs.get_adtmev().astype('float')
evs_in[:, 1] *= 1e-6 #brian takes seconds
if duration == None and len(stimulus_abs) > 0:
duration = np.max(evs_in[:, 1])
print duration
elif duration == None:
duration = 1.
else:
duration = float(duration) / 1e3
net, M_EIP, MV_EIP = self._prepare_brian_net(evs_in)
self.outs = [net, M_EIP, MV_EIP]
net.reinit(states=False)
print('running virtual IFLSWTA for {0}s'.format(duration))
net.run(duration)
sp = np.array(M_EIP.spikes).reshape(-1, 2)
sp[:, 0] += (
2**16
) #slot 2 in text.xml. THIS IS A POSSIBLE SOURCE OF TEST ERROR
sp[:, 1] *= 1e6
return sp