def test_rnasnp_built_cpd(self): """ check the performance after a filter added :return: """ snp_file_name = "./snp_line.rnasnp" rnasnp_list, rnasnp_list_head = RNAsnp.rnasnp_extractor(snp_file_name) seq_rebuilt = RNAsnp.rebuild_seq(snp_file_name) # rnasnp_built_cpd(list_rnasnp, head_list_rnasnp, sequence_string, list_codon=gc.codon_list): codon_pair = RNAsnp.rnasnp_built_cpd(rnasnp_list, rnasnp_list_head, seq_rebuilt) for key1 in codon_pair.keys(): if codon_pair[key1]: print key1, str(codon_pair[key1])
def test_get_all_from_one_file(self): filename_rnasnp = "rnasnp4test.rnasnp" rnasnp_content, rnasnp_head = RNAsnp.rnasnp_extractor(filename_rnasnp) self.assertEqual(["A1G"], RNAsnp.get_snp_list(rnasnp_content))
def test_get_all_from_one_file(self): filename_rnasnp = "rnasnp4test.rnasnp" rnasnp_content,rnasnp_head = RNAsnp.rnasnp_extractor(filename_rnasnp) self.assertEqual(["A1G"], RNAsnp.get_snp_list(rnasnp_content))