def reset( self ):
Path.reset( self )
self.query_length = -1
self.query_length_perc = -1
self.query_seqlength = -1
self.match_length_perc = -1
self.subject_length = -1
self.subject_length_perc = -1
self.subject_seqlength = -1
def convertPathFileIntoMapFileWithQueryCoordsOnly( pathFile, mapFile ):
pathFileHandler = open( pathFile, "r" )
mapFileHandler = open( mapFile, "w" )
p = Path()
while True:
line = pathFileHandler.readline()
if line == "":
break
p.reset()
p.setFromTuple( line.split("\t") )
p.writeSubjectAsMapOfQuery( mapFileHandler )
pathFileHandler.close()
mapFileHandler.close()
