コード例 #1
0
ファイル: TSVTable.py プロジェクト: strbean/pubMunch-BRCA
 def __init__(self,
              fileName,
              uniqKeyCols=None,
              multiKeyCols=None,
              rowClass=None,
              typeMap=None,
              defaultColType=None,
              columns=None,
              columnNameMapper=None,
              ignoreExtraCols=False,
              isRdb=False,
              inFh=None,
              allowEmpty=False,
              dialect=csv.excel_tab):
     """Read TSV file into the object
     
     fileName - name of file, opened unless inFh is specified
     uniqKeyCols - name or names of columns to index with uniq keys,
         can be string or sequence
     multiKeyCols - name or names of columns to index, allowing multiple keys.
         can be string or sequence
     rowClass - class or class factory function to use for a row. Must take
         TSVReader and list of string values of columns.
     typeMap - if specified, it maps column names to the type objects to
         use to convert the column.  Unspecified columns will not be
         converted. Key is the column name, value can be either a type
         or a tuple of (parseFunc, formatFunc).  If a type is use,
         str() is used to convert to a printable value.
     defaultColType - if specified, type of unspecified columns
     columns - if specified, the column names to use.  The header
         should not be in the file.
     ignoreExtraCols - should extra columns be ignored?
     isRdb - file is an RDB file, ignore second row (type map still needed).
     inFh - If not None, this is used as the open file, rather than
       opening it.  Closed when the end of file is reached.
     allowEmpty - an empty input results in an EOF rather than an error.
       Should specify this if reading from a database query.
     """
     reader = TSVReader(fileName,
                        rowClass=rowClass,
                        typeMap=typeMap,
                        defaultColType=defaultColType,
                        isRdb=isRdb,
                        columns=columns,
                        columnNameMapper=columnNameMapper,
                        ignoreExtraCols=ignoreExtraCols,
                        inFh=inFh,
                        allowEmpty=allowEmpty,
                        dialect=dialect)
     try:
         self.columns = reader.columns
         self.colTypes = reader.colTypes
         self.colMap = reader.colMap
         self.__buildIndices(uniqKeyCols, multiKeyCols)
         self.__readBody(reader)
     except Exception, e:
         raise TSVError("load failed", reader=reader,
                        cause=e), None, sys.exc_info()[2]
コード例 #2
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 def __init__(self, fileName):
     TSVReader.__init__(self, fileName, typeMap=typeMap)
コード例 #3
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ファイル: GeneCheck.py プロジェクト: Moxikai/pubMunch
 def __init__(self, fileName, isRdb=False):
     TSVReader.__init__(self, fileName, typeMap=typeMap, isRdb=isRdb)
コード例 #4
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 def __init__(self, fileName, isRdb=False):
     TSVReader.__init__(self, fileName, typeMap=typeMap, isRdb=isRdb)
コード例 #5
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 def __init__(self, fileName):
     TSVReader.__init__(self, fileName, typeMap=typeMap)