コード例 #1
0
ファイル: dvc.py プロジェクト: stephen-e-cox/pychron
    def _make_record(self, record, prog, i, n, calculate_f_only=False):
        meta_repo = self.meta_repo
        if prog:
            prog.change_message('Loading analysis {}. {}/{}'.format(
                record.record_id, i, n))

        expid = record.repository_identifier
        if not expid:
            exps = record.repository_ids
            self.debug('Analysis {} is associated multiple repositories '
                       '{}'.format(record.record_id, ','.join(exps)))
            expid = None
            if self.selected_repositories:
                rr = [si for si in self.selected_repositories if si in exps]
                if rr:
                    if len(rr) > 1:
                        expid = self._get_requested_experiment_id(rr)
                    else:
                        expid = rr[0]

            if expid is None:
                expid = self._get_requested_experiment_id(exps)

        if isinstance(record, DVCAnalysis):
            a = record
        else:
            self.debug('use_repo_suffix={} record_id={}'.format(
                record.use_repository_suffix, record.record_id))
            try:
                rid = record.record_id
                if record.use_repository_suffix:
                    rid = '-'.join(rid.split('-')[:-1])

                a = DVCAnalysis(rid, expid)
            except AnalysisNotAnvailableError:
                self.info(
                    'Analysis {} not available. Trying to clone repository "{}"'
                    .format(rid, expid))
                try:
                    self.sync_repo(expid)
                except CredentialException:
                    self.warning_dialog(
                        'Invalid credentials for GitHub/GitLab')
                    return

                try:
                    a = DVCAnalysis(rid, expid)
                except AnalysisNotAnvailableError:
                    self.warning_dialog(
                        'Analysis {} not in repository {}'.format(rid, expid))
                    return

            # get repository branch
            a.branch = get_repository_branch(
                os.path.join(paths.repository_dataset_dir, expid))
            # a.set_tag(record.tag)
            self.debug('Irradiation {}'.format(a.irradiation))
            # load irradiation
            if a.irradiation and a.irradiation not in ('NoIrradiation', ):
                chronology = meta_repo.get_chronology(a.irradiation)
                a.set_chronology(chronology)

                frozen_production = self._get_frozen_production(
                    rid, a.repository_identifier)
                if frozen_production:
                    pname, prod = frozen_production.name, frozen_production
                else:
                    pname, prod = meta_repo.get_production(
                        a.irradiation, a.irradiation_level)
                a.set_production(pname, prod)

                j, lambda_k = meta_repo.get_flux(
                    record.irradiation, record.irradiation_level,
                    record.irradiation_position_position)
                a.j = j
                if lambda_k:
                    a.arar_constants.lambda_k = lambda_k

                if calculate_f_only:
                    a.calculate_F()
                else:
                    a.calculate_age()
        return a
コード例 #2
0
ファイル: dvc.py プロジェクト: waffle-iron/pychron
    def _make_record(self, record, prog, i, n, calculate_f=False, calculate_f_only=False):
        # def _make_record(self, record, calculate_f=False):
        ost = time.time()
        if prog:
            prog.change_message('Loading analysis {}. {}/{}'.format(record.record_id, i, n))

        expid = record.experiment_identifier
        if not expid:
            exps = record.experiment_ids
            self.debug('Analysis {} is associated multiple experiments '
                       '{}'.format(record.record_id, ','.join(exps)))
            expid = None
            if self.selected_experiments:
                rr = [si for si in self.selected_experiments if si in exps]
                if rr:
                    if len(rr) > 1:
                        expid = self._get_requested_experiment_id(rr)
                    else:
                        expid = rr[0]

            if expid is None:
                expid = self._get_requested_experiment_id(exps)

        # func = lambda: DVCAnalysis(record.record_id, expid)
        # a = timethis(func, )
        # st = time.time()

        if isinstance(record, DVCAnalysis):
            a = record
        else:
            # if isinstance(record, AnalysisTbl):
            # record = record.record_view

            st = time.time()
            a = DVCAnalysis(record.record_id, expid)
            cot = time.time() - st
            # cot = time.time() - st
            # if cot>0.1:
            #     print 'constructor {}'.format(cot)

            # load irradiation
            if a.irradiation:
                st = time.time()
                meta_repo = self.meta_repo

                chronology = meta_repo.get_chronology(a.irradiation)
                a.set_chronology(chronology)
                ct = time.time() - st

                st = time.time()
                pname = self.db.get_production_name(a.irradiation, a.irradiation_level)

                prod = meta_repo.get_production(pname)
                a.set_production(pname, prod)
                pt = time.time() - st

                st = time.time()
                j, lambda_k = meta_repo.get_flux(record.irradiation, record.irradiation_level,
                                                 record.irradiation_position_position)
                a.j = j
                if lambda_k:
                    a.arar_constants.lambda_k = lambda_k

                ft = time.time() - st
                a.set_tag(record.tag_dict)
                if calculate_f_only:
                    a.calculate_F()
                else:
                    a.calculate_age()

            et = time.time() - ost
            if et > 0.1:
                f = '-------'

                print '{} make run {} {} {}'.format(f, i, record.record_id, et)
                print 'constructor {}'.format(cot)
                print 'chronology {}'.format(ct)
                print 'production {}'.format(pt)
                print 'flux {}'.format(ft)
        return a