class ESIndexerBase(object):
ES_HOST = ES_HOST
ES_INDEX_NAME = ES_INDEX_NAME
ES_INDEX_TYPE = 'gene'
def __init__(self):
self.conn = ES(self.ES_HOST, default_indexes=[self.ES_INDEX_NAME],
timeout=10.0)
self.step = 10000
def create_index(self):
try:
print self.conn.open_index(self.ES_INDEX_NAME)
except IndexMissingException:
print self.conn.create_index(self.ES_INDEX_NAME)
def delete_index_type(self, index_type):
'''Delete all indexes for a given index_type.'''
index_name = self.ES_INDEX_NAME
# index_type = self.ES_INDEX_TYPE
#Check if index_type exists
mapping = self.conn.get_mapping(index_type, index_name)
if index_name not in mapping or index_type not in mapping[index_name]:
print 'Error: index type "%s" does not exist in index "%s".' % (index_type, index_name)
return
path = '/%s/%s' % (index_name, index_type)
if ask('Confirm to delete all data under "%s":' % path) == 'Y':
return self.conn.delete_mapping(index_name, index_type)
def index(self, doc, index_type, id=None):
'''add a doc to the index. If id is not None, the existing doc will be
updated.
'''
# index_type = self.ES_INDEX_TYPE
return self.conn.index(doc, self.ES_INDEX_NAME, index_type, id=id)
def delete_index(self, index_type, id):
'''delete a doc from the index based on passed id.'''
# index_type = self.ES_INDEX_TYPE
return self.conn.delete(self.ES_INDEX_NAME, index_type, id)
def optimize(self):
return self.conn.optimize(self.ES_INDEX_NAME, wait_for_merge=True)
def get_field_mapping(self):
import dataload
reload(dataload)
dataload.register_sources()
return dataload.get_mapping()
def build_index(self, doc_d, update_mapping=False, bulk=True):
index_name = self.ES_INDEX_NAME
index_type = self.ES_INDEX_TYPE
#Test if index exists
try:
print "Opening index...", self.conn.open_index(index_name)
except NotFoundException:
print 'Error: index "%s" does not exist. Create it first.' % index_name
return -1
try:
cur_mapping = self.conn.get_mapping(index_type, index_name)
empty_mapping = False
except ElasticSearchException:
#if no existing mapping available for index_type
#force update_mapping to True
empty_mapping = True
update_mapping = True
# empty_mapping = not cur_mapping[index_name].get(index_type, {})
# if empty_mapping:
# #if no existing mapping available for index_type
# #force update_mapping to True
# update_mapping = True
if update_mapping:
print "Updating mapping...",
if not empty_mapping:
print "\n\tRemoving existing mapping...",
print self.conn.delete_mapping(index_name, index_type)
_mapping = self.get_field_mapping()
print self.conn.put_mapping(index_type,
_mapping,
[index_name])
print "Building index..."
t0 = time.time()
for doc_id, doc in doc_d.items():
self.conn.index(doc, index_name, index_type, doc_id, bulk=bulk)
print self.conn.flush()
print self.conn.refresh()
print "Done[%s]" % timesofar(t0)
def query(self, qs, fields='symbol,name', **kwargs):
_q = StringQuery(qs)
res = self.conn.search(_q, fields=fields, **kwargs)
return res
