コード例 #1
0
ファイル: test_ffs.py プロジェクト: imagingofthings/pyFFS
    def test_ffsn_ref(self):
        T = [1, 1]
        T_c = [0, 0]
        N_FS = [3, 3]
        N_s = [4, 3]

        for mod in AVAILABLE_MOD:

            # Sample the kernel and do the transform.
            sample_points, _ = ffsn_sample(T=T,
                                           N_FS=N_FS,
                                           T_c=T_c,
                                           N_s=N_s,
                                           mod=mod)
            diric_samples = dirichlet_2D(sample_points=sample_points,
                                         T=T,
                                         T_c=T_c,
                                         N_FS=N_FS)
            diric_FS = _ffsn(x=diric_samples, T=T, N_FS=N_FS, T_c=T_c)

            # Compare with theoretical result.
            diric_FS_exact = mod.outer(
                dirichlet_fs(N_FS[0], T[0], T_c[0], mod=mod),
                dirichlet_fs(N_FS[1], T[1], T_c[1], mod=mod),
            )
            assert mod.allclose(diric_FS[:N_FS[0], :N_FS[1]], diric_FS_exact)

            # Inverse transform.
            diric_samples_recov = _iffsn(x_FS=diric_FS,
                                         T=T,
                                         T_c=T_c,
                                         N_FS=N_FS)

            # Compare with original samples.
            assert mod.allclose(diric_samples, diric_samples_recov)
コード例 #2
0
    def test_ffsn_sample(self):
        N_s = [4, 3]
        for mod in AVAILABLE_MOD:
            sample_points, idx = ffsn_sample(T=[1, 1],
                                             N_FS=[3, 3],
                                             T_c=[0, 0],
                                             N_s=N_s,
                                             mod=mod)

            # check sample points
            assert sample_points[0].shape == (N_s[0], 1)
            assert sample_points[1].shape == (1, N_s[1])
            mod.testing.assert_array_equal(
                sample_points[0][:, 0],
                mod.array([0.125, 0.375, -0.375, -0.125]))
            mod.testing.assert_array_equal(sample_points[1][0, :],
                                           mod.array([0, 1 / 3, -1 / 3]))

            # check index values
            assert idx[0].shape == (N_s[0], 1)
            assert idx[1].shape == (1, N_s[1])
            mod.testing.assert_array_equal(idx[0][:, 0],
                                           mod.array([2, 3, 0, 1]))
            mod.testing.assert_array_equal(idx[1][0, :], mod.array([1, 2, 0]))

            assert all([get_array_module(s) == mod for s in sample_points])
            assert all([get_array_module(i) == mod for i in idx])
コード例 #3
0
ファイル: test_ffs.py プロジェクト: imagingofthings/pyFFS
    def test_ffsn_axes(self):
        T_x = T_y = 1
        T_cx = T_cy = 0
        N_FSx = N_FSy = 3
        N_sx, N_sy = 4, 3

        for mod in AVAILABLE_MOD:

            # Sample the kernel.
            sample_points, _ = ffsn_sample(T=[T_x, T_y],
                                           N_FS=[N_FSx, N_FSy],
                                           T_c=[T_cx, T_cy],
                                           N_s=[N_sx, N_sy],
                                           mod=mod)
            diric_samples = dirichlet_2D(sample_points=sample_points,
                                         T=[T_x, T_y],
                                         T_c=[T_cx, T_cy],
                                         N_FS=[N_FSx, N_FSy])

            # Add new dimension.
            diric_samples = diric_samples[:, mod.newaxis, :]
            axes = (0, 2)

            # Perform transform.
            diric_FS = ffsn(x=diric_samples,
                            T=[T_x, T_y],
                            T_c=[T_cx, T_cy],
                            N_FS=[N_FSx, N_FSy],
                            axes=axes)

            # Compare with theoretical result.
            diric_FS_exact = mod.outer(dirichlet_fs(N_FSx, T_x, T_cx, mod=mod),
                                       dirichlet_fs(N_FSy, T_y, T_cy, mod=mod))
            assert mod.allclose(diric_FS[:N_FSx, 0, :N_FSy], diric_FS_exact)

            # Inverse transform.
            diric_samples_recov = iffsn(x_FS=diric_FS,
                                        T=[T_x, T_y],
                                        T_c=[T_cx, T_cy],
                                        N_FS=[N_FSx, N_FSy],
                                        axes=axes)

            # Compare with original samples.
            assert mod.allclose(diric_samples, diric_samples_recov)
コード例 #4
0
    def test_ffsn_sample_shape(self):
        for mod in AVAILABLE_MOD:
            D = 5
            T = mod.ones(D)
            N_FS = mod.arange(D) * 2 + 3
            T_c = mod.zeros(D)
            N_s = N_FS

            sample_points, idx = ffsn_sample(T=T,
                                             N_FS=N_FS,
                                             T_c=T_c,
                                             N_s=N_s,
                                             mod=mod)

            # check shape
            for d in range(D):
                sh = [1] * D
                sh[d] = N_s[d]
                assert list(sample_points[d].shape) == sh
                assert list(idx[d].shape) == sh

            assert all([get_array_module(s) == mod for s in sample_points])
            assert all([get_array_module(i) == mod for i in idx])
コード例 #5
0
ファイル: ffsn.py プロジェクト: imagingofthings/pyFFS
def profile_ffsn(n_trials):
    print(f"\nCOMPARING FFSN APPROACHES WITH {n_trials} TRIALS")

    T = [1, 1]
    T_c = [0, 0]
    N_FS_vals = [11, 31, 101, 301, 1001, 3001, 10001]

    n_std = 1

    func = {"ffsn_fftn": ffsn, "ffsn_ref": _ffsn}

    proc_time = dict()
    proc_time_std = dict()

    for _N_FS in N_FS_vals:
        print("\nN_FS : {}".format(_N_FS))
        N_FS = [_N_FS, _N_FS]
        proc_time[_N_FS] = dict()
        proc_time_std[_N_FS] = dict()

        # Loop through modules
        for mod in AVAILABLE_MOD:

            backend = get_module_name(mod)

            # fastest FFT length depends on module
            _N_s = next_fast_len(_N_FS, mod=mod)
            N_s = [_N_s, _N_s]
            print("-- module : {}, Length-{} FFT".format(backend, N_s))

            for _f in func:

                # Sample the kernel and do the transform.
                sample_points, _ = ffsn_sample(T=T,
                                               N_FS=N_FS,
                                               T_c=T_c,
                                               N_s=N_s,
                                               mod=mod)
                diric_samples = dirichlet_2D(sample_points=sample_points,
                                             T=T,
                                             T_c=T_c,
                                             N_FS=N_FS)

                _key = "{}_{}".format(_f, backend)
                timings = []
                for _ in range(n_trials):
                    start_time = time.time()
                    func[_f](x=diric_samples, T=T, N_FS=N_FS, T_c=T_c)
                    timings.append(time.time() - start_time)
                proc_time[_N_FS][_key] = np.mean(timings)
                proc_time_std[_N_FS][_key] = np.std(timings)

                print("{} : {} seconds".format(_f, proc_time[_N_FS][_key]))

    # plot results
    fig, ax = plt.subplots()
    util.comparison_plot(proc_time, proc_time_std, n_std, ax)
    ax.set_xlabel("Number of FS coefficients")
    fig.tight_layout()

    fname = pathlib.Path(__file__).resolve().parent / "profile_ffsn_2d.png"
    fig.savefig(fname, dpi=300)