def permeabiltyEngelhardtPitter(poro, q=3.5, s=5e-3,
mesh=None, meshI=None):
r"""
For sand and sandstones
.. math::
k & = 2\cdot 10^7 \frac{\phi^2}{(1-\phi)^2}* \frac{1}{S^2} \\
S & = q\cdot s \\
s & = \sum_{i=1}(\frac{P_i}{r_i})
* :math:`\phi` - poro 0.0 --1.0
* :math:`S` - in cm^-1 specific surface in cm^2/cm^3
* :math:`q` - (3 for spheres, > 3 shape differ from sphere)
3.5 sand
* :math:`s` - in cm^-1 (s = 1/r for particles with homogeneous radii r)
* :math:`P_i` - Particle ration with radii :math:`r_i` on 1cm^3 Sample
Returns
-------
k :
in Darcy
"""
poro = parseArgToArray(poro, mesh.cellCount(), mesh)
q = parseArgToArray(q, mesh.cellCount(), mesh)
s = parseArgToArray(s, mesh.cellCount(), mesh)
S = q * s
k = 2e7 * (poro**2 / (1.0-poro)**2) * 1.0/S**2 * physics.constants.Darcy
if meshI:
k = pg.interpolate(mesh, k, meshI.cellCenters())
k = pg.solver.fillEmptyToCellArray(meshI, k)
return k
def density(poro, densMatrix=2510, densFluid=1000, satur=1, mesh=None):
r"""
densMatrix, densFluid in kg/m^3
"""
poro = parseArgToArray(poro, mesh.cellCount(), mesh)
densMatrix = parseArgToArray(densMatrix, mesh.cellCount(), mesh)
densFluid = parseArgToArray(densFluid, mesh.cellCount(), mesh)
satur = parseArgToArray(satur, mesh.cellCount(), mesh)
dens = np.array(densMatrix * (1. - poro)) + densFluid * poro * satur
return dens
def hydraulicConductivity(perm, visc=1.0, dens=1.0, mesh=None, meshI=None):
perm = parseArgToArray(perm, mesh.cellCount(), mesh)
visc = parseArgToArray(visc, mesh.cellCount(), mesh)
dens = parseArgToArray(dens, mesh.cellCount(), mesh)
k = perm * dens / visc * pg.physics.constants.g
if meshI:
k = pg.interpolate(mesh, k, meshI.cellCenters())
k = pg.solver.fillEmptyToCellArray(meshI, k)
return k
def density(poro, densMatrix=2510, densFluid=1000, satur=1,
mesh=None):
r"""
densMatrix, densFluid in kg/m^3
"""
poro = parseArgToArray(poro, mesh.cellCount(), mesh)
densMatrix = parseArgToArray(densMatrix, mesh.cellCount(), mesh)
densFluid = parseArgToArray(densFluid, mesh.cellCount(), mesh)
satur = parseArgToArray(satur, mesh.cellCount(), mesh)
dens = np.array(densMatrix * (1.-poro)) + densFluid * poro * satur
return dens
def hydraulicConductivity(perm, visc=1.0, dens=1.0,
mesh=None, meshI=None):
perm = parseArgToArray(perm, mesh.cellCount(), mesh)
visc = parseArgToArray(visc, mesh.cellCount(), mesh)
dens = parseArgToArray(dens, mesh.cellCount(), mesh)
k = perm * dens/visc * pg.physics.constants.g
if meshI:
k = pg.interpolate(mesh, k, meshI.cellCenters())
k = pg.solver.fillEmptyToCellArray(meshI, k)
return k
def velocityVp(porosity, vMatrix=5000, vFluid=1442, S=1, mesh=None):
r"""Compute velocity from porosity."""
porosity = parseArgToArray(porosity, mesh.cellCount(), mesh)
vMatrix = parseArgToArray(vMatrix, mesh.cellCount(), mesh)
vFluid = parseArgToArray(vFluid, mesh.cellCount(), mesh)
S = parseArgToArray(S, mesh.cellCount(), mesh)
vAir = 343.0
# better use petrophysics module
vel = 1. / (np.array(
(1. - porosity) / vMatrix) + porosity * S / vFluid + porosity *
(1. - S) / vAir)
return vel
def velocityVp(porosity, vMatrix=5000, vFluid=1442, S=1, mesh=None):
r"""
"""
porosity = parseArgToArray(porosity, mesh.cellCount(), mesh)
vMatrix = parseArgToArray(vMatrix, mesh.cellCount(), mesh)
vFluid = parseArgToArray(vFluid, mesh.cellCount(), mesh)
S = parseArgToArray(S, mesh.cellCount(), mesh)
vAir = 343.0
vel = 1./(np.array((1.-porosity)/vMatrix) + \
porosity * S / vFluid + \
porosity * (1.-S)/vAir)
return vel
def velocityVp(porosity, vMatrix=5000, vFluid=1442, S=1,
mesh=None):
r"""Compute velocity from porosity."""
porosity = parseArgToArray(porosity, mesh.cellCount(), mesh)
vMatrix = parseArgToArray(vMatrix, mesh.cellCount(), mesh)
vFluid = parseArgToArray(vFluid, mesh.cellCount(), mesh)
S = parseArgToArray(S, mesh.cellCount(), mesh)
vAir = 343.0
# better use petrophysics module
vel = 1./(np.array((1.-porosity)/vMatrix) +
porosity * S / vFluid +
porosity * (1.-S)/vAir)
return vel
def velocityVp(porosity, vMatrix=5000, vFluid=1442, S=1,
mesh=None):
r"""
"""
porosity = parseArgToArray(porosity, mesh.cellCount(), mesh)
vMatrix = parseArgToArray(vMatrix, mesh.cellCount(), mesh)
vFluid = parseArgToArray(vFluid, mesh.cellCount(), mesh)
S = parseArgToArray(S, mesh.cellCount(), mesh)
vAir = 343.0
vel = 1./(np.array((1.-porosity)/vMatrix) + \
porosity * S / vFluid + \
porosity * (1.-S)/vAir)
return vel
def resistivityArchie(rBrine,
porosity,
a=1.0,
m=2.0,
S=1.0,
n=2.0,
mesh=None,
meshI=None):
"""
.. math::
\rho = a\rho_{\text{Brine}}\phi^{-m}\S_w^{-n}
* :math:`\rho` - the electrical conductivity of the fluid saturated rock
* :math:`\rho_{\text{Brine}}` - electrical conductivity of the brine
* :math:`\phi` - porosity 0.0 --1.0
* :math:`a` - tortuosity factor. (common 1)
* :math:`m` - cementation exponent of the rock
(usually in the range 1.3 -- 2.5 for sandstones)
* :math:`n` - is the saturation exponent (usually close to 2)
"""
rB = None
if rBrine.ndim == 1:
rB = pg.RMatrix(1, len(rBrine))
rB[0] = parseArgToArray(rBrine, mesh.cellCount(), mesh)
elif rBrine.ndim == 2:
rB = pg.RMatrix(len(rBrine), len(rBrine[0]))
for i in range(len(rBrine)):
rB[i] = rBrine[i]
porosity = parseArgToArray(porosity, mesh.cellCount(), mesh)
a = parseArgToArray(a, mesh.cellCount(), mesh)
m = parseArgToArray(m, mesh.cellCount(), mesh)
S = parseArgToArray(S, mesh.cellCount(), mesh)
n = parseArgToArray(n, mesh.cellCount(), mesh)
r = pg.RMatrix(len(rBrine), len(rBrine[0]))
for i in range(len(r)):
r[i] = rB[i] * a * porosity**(-m) * S**(-n)
rI = pg.RMatrix(len(r), meshI.cellCount())
if meshI:
pg.interpolate(mesh, r, meshI.cellCenters(), rI)
for i in range(len(rI)):
rI[i] = pg.solver.fillEmptyToCellArray(meshI, rI[i])
return rI
def resistivityArchie(rBrine, porosity, a=1.0, m=2.0, S=1.0, n=2.0,
mesh=None, meshI=None):
"""
.. math::
\rho = a\rho_{\text{Brine}}\phi^{-m}\S_w^{-n}
* :math:`\rho` - the electrical conductivity of the fluid saturated rock
* :math:`\rho_{\text{Brine}}` - electrical conductivity of the brine
* :math:`\phi` - porosity 0.0 --1.0
* :math:`a` - tortuosity factor. (common 1)
* :math:`m` - cementation exponent of the rock
(usually in the range 1.3 -- 2.5 for sandstones)
* :math:`n` - is the saturation exponent (usually close to 2)
"""
rB = None
if rBrine.ndim == 1:
rB = pg.RMatrix(1, len(rBrine))
rB[0] = parseArgToArray(rBrine, mesh.cellCount(), mesh)
elif rBrine.ndim == 2:
rB = pg.RMatrix(len(rBrine), len(rBrine[0]))
for i in range(len(rBrine)):
rB[i] = rBrine[i]
porosity = parseArgToArray(porosity, mesh.cellCount(), mesh)
a = parseArgToArray(a, mesh.cellCount(), mesh)
m = parseArgToArray(m, mesh.cellCount(), mesh)
S = parseArgToArray(S, mesh.cellCount(), mesh)
n = parseArgToArray(n, mesh.cellCount(), mesh)
r = pg.RMatrix(len(rBrine), len(rBrine[0]))
for i in range(len(r)):
r[i] = rB[i] * a * porosity**(-m) * S**(-n)
rI = pg.RMatrix(len(r), meshI.cellCount())
if meshI:
pg.interpolate(mesh, r, meshI.cellCenters(), rI)
for i in range(len(rI)):
rI[i] = pg.solver.fillEmptyToCellArray(meshI, rI[i])
return rI
def solveFiniteVolume(mesh,
a=1.0,
f=0.0,
fn=0.0,
vel=0.0,
u0=None,
times=None,
uL=None,
relax=1.0,
ws=None,
scheme='CDS',
**kwargs):
"""
"""
# The Workspace is to hold temporary data or preserve matrix rebuild
swatch = pg.core.Stopwatch(True)
sparse = True
workspace = WorkSpace()
if ws:
workspace = ws
a = solver.parseArgToArray(a, [mesh.cellCount(), mesh.boundaryCount()])
f = solver.parseArgToArray(f, mesh.cellCount())
fn = solver.parseArgToArray(fn, mesh.cellCount())
boundsDirichlet = None
boundsNeumann = None
if not hasattr(workspace, 'S'):
if 'uBoundary' in kwargs:
boundsDirichlet = pg.solver.parseArgToBoundaries(
kwargs['uBoundary'], mesh)
if 'duBoundary' in kwargs:
boundsNeumann = pg.solver.parseArgToBoundaries(
kwargs['duBoundary'], mesh)
workspace.S, workspace.rhsBCScales = diffusionConvectionKernel(
mesh=mesh,
a=a,
f=f,
uBoundaries=boundsDirichlet,
duBoundaries=boundsNeumann,
u0=u0,
fn=fn,
vel=vel,
scheme=scheme,
sparse=sparse,
userData=kwargs.pop('userData', None))
print('FVM kernel 1:', swatch.duration(True))
dof = len(workspace.rhsBCScales)
# workspace.uDir = np.zeros(dof)
# if u0 is not None:
# workspace.uDir = np.array(u0)
#
# if len(boundsDirichlet):
# for boundary, val in boundsDirichlet.items():
# workspace.uDir[boundary.leftCell().id()] = val
workspace.ap = np.zeros(dof)
# for nonlinears
if uL is not None:
for i in range(dof):
val = 0.0
if sparse:
val = workspace.S.getVal(i, i) / relax
workspace.S.setVal(i, i, val)
# workspace.S[i, i] /= relax
# workspace.ap[i] = workspace.S[i, i]
else:
val = workspace.S[i, i] / relax
workspace.S[i, i] = val
workspace.ap[i] = val
print('FVM kernel 2:', swatch.duration(True))
# endif: not hasattr(workspace, 'S'):
workspace.rhs = np.zeros(len(workspace.rhsBCScales))
workspace.rhs[0:mesh.cellCount()] = f # * mesh.cellSizes()
# if len(workspace.uDir):
workspace.rhs += workspace.rhsBCScales
# for nonlinear: relax progress with scaled last result
if uL is not None:
workspace.rhs += (1. - relax) * workspace.ap * uL
# print('FVM: Prep:', swatch.duration(True))
if not hasattr(times, '__len__'):
if sparse and not hasattr(workspace, 'solver'):
Sm = pg.matrix.SparseMatrix(workspace.S)
# hold Sm until we have reference counting,
# loosing Sm here will kill LinSolver later
workspace.Sm = Sm
workspace.solver = pg.core.LinSolver(Sm, True)
u = None
if sparse:
u = workspace.solver.solve(workspace.rhs)
else:
u = np.linalg.solve(workspace.S, workspace.rhs)
print('FVM solve:', swatch.duration(True))
return u[0:mesh.cellCount():1]
else:
theta = kwargs.pop('theta', 0.5)
verbose = kwargs.pop('verbose', False)
if sparse:
I = solver.identity(len(workspace.rhs))
else:
I = np.diag(np.ones(len(workspace.rhs)))
print("solve cN")
return solver.crankNicolson(times,
theta,
workspace.S,
I,
f=workspace.rhs,
u0=u0,
verbose=verbose)
def solveFiniteVolume(mesh, a=1.0, f=0.0, fn=0.0, vel=0.0, u0=None,
times=None,
uL=None, relax=1.0,
ws=None, scheme='CDS', **kwargs):
"""
"""
# The Workspace is to hold temporary data or preserve matrix rebuild
swatch = pg.Stopwatch(True)
sparse = True
workspace = WorkSpace()
if ws:
workspace = ws
a = solver.parseArgToArray(a, [mesh.cellCount(), mesh.boundaryCount()])
f = solver.parseArgToArray(f, mesh.cellCount())
fn = solver.parseArgToArray(fn, mesh.cellCount())
boundsDirichlet = None
boundsNeumann = None
if not hasattr(workspace, 'S'):
if 'uBoundary' in kwargs:
boundsDirichlet = pg.solver.parseArgToBoundaries(
kwargs['uBoundary'], mesh)
if 'duBoundary' in kwargs:
boundsNeumann = pg.solver.parseArgToBoundaries(
kwargs['duBoundary'], mesh)
workspace.S, workspace.rhsBCScales = diffusionConvectionKernel(
mesh=mesh, a=a, f=f, uBoundaries=boundsDirichlet,
duBoundaries=boundsNeumann, u0=u0, fn=fn, vel=vel,
scheme=scheme, sparse=sparse,
userData=kwargs.pop('userData', None))
print('FVM kernel 1:', swatch.duration(True))
dof = len(workspace.rhsBCScales)
# workspace.uDir = np.zeros(dof)
# if u0 is not None:
# workspace.uDir = np.array(u0)
#
# if len(boundsDirichlet):
# for boundary, val in boundsDirichlet.items():
# workspace.uDir[boundary.leftCell().id()] = val
workspace.ap = np.zeros(dof)
# for nonlinears
if uL is not None:
for i in range(dof):
val = 0.0
if sparse:
val = workspace.S.getVal(i, i) / relax
workspace.S.setVal(i, i, val)
# workspace.S[i, i] /= relax
# workspace.ap[i] = workspace.S[i, i]
else:
val = workspace.S[i, i] / relax
workspace.S[i, i] = val
workspace.ap[i] = val
print('FVM kernel 2:', swatch.duration(True))
# endif: not hasattr(workspace, 'S'):
workspace.rhs = np.zeros(len(workspace.rhsBCScales))
workspace.rhs[0:mesh.cellCount()] = f # * mesh.cellSizes()
# if len(workspace.uDir):
workspace.rhs += workspace.rhsBCScales
# for nonlinear: relax progress with scaled last result
if uL is not None:
workspace.rhs += (1. - relax) * workspace.ap * uL
# print('FVM: Prep:', swatch.duration(True))
if not hasattr(times, '__len__'):
if sparse and not hasattr(workspace, 'solver'):
Sm = pg.RSparseMatrix(workspace.S)
# hold Sm until we have reference counting,
# loosing Sm here will kill LinSolver later
workspace.Sm = Sm
workspace.solver = pg.LinSolver(Sm, True)
u = None
if sparse:
u = workspace.solver.solve(workspace.rhs)
else:
u = np.linalg.solve(workspace.S, workspace.rhs)
print('FVM solve:', swatch.duration(True))
return u[0:mesh.cellCount():1]
else:
theta = kwargs.pop('theta', 0.5)
verbose = kwargs.pop('verbose', False)
if sparse:
I = solver.identity(len(workspace.rhs))
else:
I = np.diag(np.ones(len(workspace.rhs)))
print("solve cN")
return solver.crankNicolson(times, theta, workspace.S, I,
f=workspace.rhs, u0=u0, verbose=verbose)