def bibtex():
bib = references_path("bibtex", "iso6393.bib")
glottolog_ref_ids = {}
if bib.exists():
with bib.open(encoding="utf8") as fp:
for rec in fp.read().split("@misc"):
if rec.strip():
rec = Source.from_bibtex("@misc" + rec)
if "glottolog_ref_id" in rec:
glottolog_ref_ids[rec.id] = rec["glottolog_ref_id"]
with bib.open("w", encoding="utf8") as fp:
for id_, rows in groupby(iter_change_requests(), lambda c: c["CR Number"]):
fp.write(change_request_as_source(id_, list(rows), glottolog_ref_ids).bibtex())
fp.write("\n\n")
def bibtex():
bib = references_path('bibtex', 'iso6393.bib')
glottolog_ref_ids = {}
if bib.exists():
with bib.open(encoding='utf8') as fp:
for rec in fp.read().split('@misc'):
if rec.strip():
rec = Source.from_bibtex('@misc' + rec)
if 'glottolog_ref_id' in rec:
glottolog_ref_ids[rec.id] = rec['glottolog_ref_id']
with bib.open('w', encoding='utf8') as fp:
for id_, rows in groupby(iter_change_requests(),
lambda c: c['CR Number']):
fp.write(
change_request_as_source(id_, list(rows),
glottolog_ref_ids).bibtex())
fp.write('\n\n')
# _bibfiles.py - ordered collection of bibfiles with load/save api
import datetime
from six import string_types
from pyglottolog.util import references_path, read_ini
from pyglottolog.monsterlib import _bibtex
from pyglottolog.monsterlib._bibfiles_db import Database
__all__ = ['Collection', 'BibFile', 'Database']
DIR = references_path('bibtex')
class Collection(list):
"""Directory with an INI-file with settings for BibTeX files inside."""
_encoding = 'utf-8-sig'
@classmethod
def _bibfiles(cls, directory):
"""Read the INI-file, yield bibfile instances for sections."""
cfg = read_ini(directory.parent.joinpath('BIBFILES.ini'))
for s in cfg.sections():
if not s.endswith('.bib'):
continue
filepath = directory.joinpath(s)
assert filepath.exists()
sortkey = cfg.get(s, 'sortkey')
if sortkey.lower() == 'none':
def main(repos=DATA_DIR, rebuild=False):
bibfiles = _bibfiles.Collection(references_path('bibtex', repos=repos))
previous = references_path('monster.csv', repos=repos)
replacements = build_path('monster-replacements.json', repos=repos)
monster = _bibfiles.BibFile(
build_path('monster-utf8.bib', repos=repos), encoding='utf-8', sortkey='bibkey')
tree = languoids_path('tree', repos=repos)
hht = HHTypes(repos=repos)
print('%s open/rebuild bibfiles db' % time.ctime())
db = bibfiles.to_sqlite(
build_path('_bibfiles.sqlite3', repos=repos).as_posix(),
rebuild=rebuild)
print('%s compile_monster' % time.ctime())
m = dict(db.merged())
print('%s load hh.bib' % time.ctime())
hhbib = bibfiles['hh.bib'].load()
# Annotate with macro_area from lgcode when lgcode is assigned manually
print('%s macro_area_from_lgcode' % time.ctime())
m = macro_area_from_lgcode(m, tree)
# Annotate with hhtype
print('%s annotate hhtype' % time.ctime())
m = markconservative(
m,
hht.triggers,
hhbib,
hht,
build_path('monstermark-hht.txt', repos=repos),
rank=lambda l: hht[l])
ltriggers = languoids.load_triggers(tree=tree)
# Annotate with lgcode
print('%s annotate lgcode' % time.ctime())
m = markconservative(
m,
ltriggers['lgcode'],
hhbib,
hht,
build_path('monstermark-lgc.txt', repos=repos))
# Annotate with inlg
print('%s add_inlg_e' % time.ctime())
m = add_inlg_e(m, ltriggers['inlg'])
# Print some statistics
stats = Counter()
print(time.ctime())
for t, f in m.values():
stats.update(['entry'])
for field in ['lgcode', 'hhtype', 'macro_area']:
if field in f:
stats.update([field])
print("# entries", stats['entry'])
for field in ['lgcode', 'hhtype', 'macro_area']:
print("with " + field, stats[field])
# Update the CSV with the previous mappings for later reference
print('%s update_previous' % time.ctime())
db.to_csvfile(previous)
print('%s save_replacements' % time.ctime())
db.to_replacements(replacements)
# Trickling back
print('%s trickle' % time.ctime())
db.trickle(bibfiles)
# Save
print('%s save as utf8' % time.ctime())
monster.save(m, verbose=False)
print('%s done.' % time.ctime())
from pyglottolog import languoids
from pyglottolog.util import references_path, parse_conjunctions, read_ini
from pyglottolog._bibtex_undiacritic import undiacritic
__all__ = [
'add_inlg_e',
'keyid',
'wrds', 'setd', 'setd3', 'indextrigs',
'lstat', 'lstat_witness',
'hhtype_to_n', 'expl_to_hhtype', 'lgcode',
'read_csv_dict', 'write_csv_rows', 'load_triggers',
'pitems',
]
HHTYPE = references_path('alt4hhtype.ini')
def read_csv_dict(filename):
return {row[0]: row for row in csv_iterrows(filename)}
def csv_iterrows(filename, fieldnames=None, dialect='excel'):
with open(filename) as fd:
reader = csv.reader(fd, dialect=dialect)
if fieldnames is None:
fieldnames = next(reader)
make_row = namedtuple('Row', fieldnames)._make
for row in reader:
yield make_row(row)
def __init__(self, repos=None):
ini = read_ini(references_path('hhtype.ini', repos=repos))
self._types = sorted([HHType(s, ini) for s in ini.sections()],
reverse=True)
self._type_by_id = {t.id: t for t in self._types}
def __init__(self, repos=None):
ini = read_ini(references_path("hhtype.ini", repos=repos))
self._types = sorted([HHType(s, ini) for s in ini.sections()], reverse=True)
self._type_by_id = {t.id: t for t in self._types}
# _bibfiles.py - ordered collection of bibfiles with load/save api
import os
import io
import datetime
from clldutils.inifile import INI
from pyglottolog.util import references_path
import _bibtex
from _bibfiles_db import Database
__all__ = ['Collection', 'BibFile', 'Database']
DIR = references_path('bibtex').as_posix()
CONFIG = 'BIBFILES.ini'
class Collection(list):
"""Directory with an INI-file with settings for BibTeX files inside."""
_encoding = 'utf-8-sig'
@classmethod
def _bibfiles(cls, directory, config, endwith):
"""Read the INI-file, yield bibfile instances for sections."""
cfg = INI(interpolation=None)
cfg.read(os.path.join(directory, '..', config))
for s in cfg.sections():
if not s.endswith(endwith):
continue
def main(repos=DATA_DIR, rebuild=False):
bibfiles = _bibfiles.Collection(references_path('bibtex', repos=repos))
previous = references_path('monster.csv', repos=repos)
replacements = build_path('monster-replacements.json', repos=repos)
monster = _bibfiles.BibFile(
build_path('monster-utf8.bib', repos=repos), encoding='utf-8', sortkey='bibkey')
tree = languoids_path('tree', repos=repos)
hht = HHTypes(repos=repos)
print('%s open/rebuild bibfiles db' % time.ctime())
db = bibfiles.to_sqlite(
build_path('_bibfiles.sqlite3', repos=repos).as_posix(),
rebuild=rebuild)
print('%s compile_monster' % time.ctime())
m = dict(db.merged())
print('%s load hh.bib' % time.ctime())
hhbib = bibfiles['hh.bib'].load()
# Annotate with macro_area from lgcode when lgcode is assigned manually
print('%s macro_area_from_lgcode' % time.ctime())
m = macro_area_from_lgcode(m, tree)
# Annotate with hhtype
print('%s annotate hhtype' % time.ctime())
m = markconservative(
m,
hht.triggers,
hhbib,
hht,
build_path('monstermark-hht.txt', repos=repos),
rank=lambda l: hht[l])
ltriggers = languoids.load_triggers(tree=tree)
# Annotate with lgcode
print('%s annotate lgcode' % time.ctime())
m = markconservative(
m,
ltriggers['lgcode'],
hhbib,
hht,
build_path('monstermark-lgc.txt', repos=repos))
# Annotate with inlg
print('%s add_inlg_e' % time.ctime())
m = add_inlg_e(m, ltriggers['inlg'])
# Print some statistics
stats = Counter()
print(time.ctime())
for t, f in m.values():
stats.update(['entry'])
for field in ['lgcode', 'hhtype', 'macro_area']:
if field in f:
stats.update([field])
print("# entries", stats['entry'])
for field in ['lgcode', 'hhtype', 'macro_area']:
print("with " + field, stats[field])
# Update the CSV with the previous mappings for later reference
print('%s update_previous' % time.ctime())
db.to_csvfile(previous)
print('%s save_replacements' % time.ctime())
db.to_replacements(replacements)
# Trickling back
print('%s trickle' % time.ctime())
db.trickle(bibfiles)
# Save
print('%s save as utf8' % time.ctime())
monster.save(m, verbose=False)
print('%s done.' % time.ctime())
import json
import sqlite3
import difflib
import operator
import itertools
import contextlib
import collections
from pyglottolog.util import references_path, build_path
import _bibtex
__all__ = ['Database']
DBFILE = build_path('_bibfiles.sqlite3').as_posix()
BIBFILE = build_path('monster-utf8.bib').as_posix()
CSVFILE = references_path('monster.csv').as_posix()
REPLACEMENTSFILE = build_path('monster-replacements.json').as_posix()
UNION_FIELDS = {'fn', 'asjp_name', 'isbn'}
IGNORE_FIELDS = {'crossref', 'numnote', 'glotto_id'}
class Database(object):
"""Bibfile collection parsed into an sqlite3 file."""
@staticmethod
def _get_bibfiles(bibfiles):
if bibfiles is None:
from _bibfiles import Collection
return Collection()
# _bibfiles.py - ordered collection of bibfiles with load/save api
import datetime
from six import string_types
from pyglottolog.util import references_path, read_ini
from pyglottolog.monsterlib import _bibtex
from pyglottolog.monsterlib._bibfiles_db import Database
__all__ = ['Collection', 'BibFile', 'Database']
DIR = references_path('bibtex')
class Collection(list):
"""Directory with an INI-file with settings for BibTeX files inside."""
_encoding = 'utf-8-sig'
@classmethod
def _bibfiles(cls, directory):
"""Read the INI-file, yield bibfile instances for sections."""
cfg = read_ini(directory.parent.joinpath('BIBFILES.ini'))
for s in cfg.sections():
if not s.endswith('.bib'):
continue
filepath = directory.joinpath(s)
assert filepath.exists()
sortkey = cfg.get(s, 'sortkey')
if sortkey.lower() == 'none':
