def setUp(self, pygrDataPath=None, **kwargs):
# overwrite the PYGRDATAPATH environment variable
self.tempdir = testutil.TempDir('pygrdata')
if pygrDataPath is None:
pygrDataPath = self.tempdir.path
worldbase.update(pygrDataPath, **kwargs)
# handy shortcuts
self.EQ = self.assertEqual
def setUp(self, worldbasePath=None, **kwargs):
# overwrite the WORLDBASEPATH environment variable
self.tempdir = testutil.TempDir('pygrdata')
if worldbasePath is None:
worldbasePath = self.tempdir.path
worldbase.update(worldbasePath, **kwargs)
# handy shortcuts
self.EQ = self.assertEqual
def setUp(self, worldbasePath=None, **kwargs):
# overwrite the WORLDBASEPATH environment variable
self.tempdir = testutil.TempDir('pygrdata')
if worldbasePath is None:
worldbasePath = self.tempdir.path
worldbase.update(worldbasePath, **kwargs)
# handy shortcuts
self.EQ = self.assertEqual
def test_xmlrpc(self):
"Test XMLRPC"
worldbase.clear_cache() # force all future requests to reload
worldbase.update("http://localhost:%s" % self.server.port) # from XMLRPC
check_match(self) # run all our tests
check_dir(self)
check_dir_noargs(self)
check_dir_download(self)
check_dir_re(self)
check_bind(self)
check_bind2(self)
sb_hbb1 = testutil.datafile('sp_hbb1') # test readonly checks
sp2 = seqdb.BlastDB(sb_hbb1)
sp2.__doc__ = 'another sp'
try:
worldbase.Bio.Seq.sp2 = sp2
worldbase.commit()
msg = 'failed to catch bad attempt to write to XMLRPC server'
raise KeyError(msg)
except ValueError:
pass
def test_xmlrpc(self):
"Test XMLRPC"
worldbase.clear_cache() # force all future requests to reload
# Add our test XMLRPC resource.
worldbase.update("http://localhost:%s" % self.server.port)
check_match(self) # run all our tests
check_dir(self)
check_dir_noargs(self)
check_dir_download(self)
check_dir_re(self)
check_bind(self)
check_bind2(self)
sb_hbb1 = testutil.datafile('sp_hbb1') # test readonly checks
sp2 = seqdb.BlastDB(sb_hbb1)
sp2.__doc__ = 'another sp'
try:
worldbase.Bio.Seq.sp2 = sp2
worldbase.commit()
msg = 'failed to catch bad attempt to write to XMLRPC server'
raise KeyError(msg)
except ValueError:
pass
def tearDown(self):
# Restore original worldbase path to remedy lack of isolation
# between tests from the same run
worldbase.update(None)
