def resource_list_with_prefix(layout_manager, prefix, res_class, num_ress):
def name_from_line(line):
field = LayoutManager.layline_objid(line)
if field:
return field
return LayoutManager.layline_first_field(line)
layline_test = lambda line: LayoutManager.field_starts_with(name_from_line(line), prefix)
res_type = ResourceType(res_class, layline_test, name_from_line)
res_list = [layout_manager.assign_unused_resource(res_type) for _ in range(num_ress)]
res_list.sort(key=lambda r: r.layout_name())
return res_list
#!python3
from pyhamilton import HamiltonInterface, LayoutManager, INITIALIZE, WASH96_EMPTY
def wash_empty_refill(ham, **more_options):
print('wash_empty_refill: empty the washer' +
('' if not more_options else ' with extra options ' +
str(more_options)))
ham.wait_on_response(ham.send_command(WASH96_EMPTY, **more_options))
if __name__ == '__main__':
LayoutManager('with_washer.lay', install=True)
with HamiltonInterface() as ham_int:
print('Please wait, system starting--preparing to wash washer.\n')
ham_int.wait_on_response(ham_int.send_command(INITIALIZE),
raise_first_exception=True)
wash_empty_refill(
ham_int,
refillAfterEmpty=1,
chamber1WashLiquid=1,
chamber2WashLiquid=1) # 1=both chambers; 1=Liquid 2 (water)
wash_empty_refill(ham_int) # empty
import os
from pyhamilton import (HamiltonInterface, LayoutManager, ResourceType, Tip96,
INITIALIZE, PICKUP, NoTipError, HardwareError)
layfile = os.path.abspath(os.path.join('.', 'minimal_error_example.lay'))
lmgr = LayoutManager(layfile)
tip_name_from_line = lambda line: LayoutManager.layline_first_field(line)
tip_name_condition = lambda line: LayoutManager.field_starts_with(
tip_name_from_line(line), 'HTF_L_')
tips_type = ResourceType(Tip96, tip_name_condition, tip_name_from_line)
tips = lmgr.assign_unused_resource(tips_type)
if __name__ == '__main__':
with HamiltonInterface() as hammy:
print('INITIALIZED!!',
hammy.wait_on_response(hammy.send_command(INITIALIZE)))
try:
id = hammy.send_command(PICKUP,
labwarePositions=str(tips.layout_name()) +
', 1;')
print(hammy.wait_on_response(id, raise_first_exception=True))
except NoTipError:
print('\n' * 10 + 'THERE WAS NO TIP THERE' + '\n' * 10)
except HardwareError:
print('\n' * 10 + 'Did I just crash into something?' + '\n' * 10)
def name_from_line(line):
field = LayoutManager.layline_objid(line)
if field:
return field
return LayoutManager.layline_first_field(line)
import os
from pyhamilton import (HamiltonInterface, LayoutManager, ResourceType,
Plate96, INITIALIZE, ISWAP_GET, ISWAP_PLACE,
HamiltonError)
layfile = os.path.abspath(os.path.join('.', 'grip_move_plate.lay'))
lmgr = LayoutManager(layfile)
plate_type = ResourceType(Plate96, 'Cos_96_Rd_0001')
plate = lmgr.assign_unused_resource(plate_type)
target_site_type = ResourceType(Plate96, 'Cos_96_Rd_0002')
target_site = lmgr.assign_unused_resource(target_site_type)
if __name__ == '__main__':
plate_pos = plate.layout_name() + ', ' + plate.position_id(0)
target_pos = target_site.layout_name() + ', ' + target_site.position_id(0)
with HamiltonInterface() as hammy:
hammy.wait_on_response(hammy.send_command(INITIALIZE))
for id in (hammy.send_command(ISWAP_GET,
plateLabwarePositions=plate_pos),
hammy.send_command(ISWAP_PLACE,
plateLabwarePositions=target_pos)):
print(hammy.wait_on_response(id, raise_first_exception=True))
for id in (hammy.send_command(ISWAP_GET,
plateLabwarePositions=target_pos),
hammy.send_command(ISWAP_PLACE,
plateLabwarePositions=plate_pos)):
print(hammy.wait_on_response(id, raise_first_exception=True))
width = l + 2*margin + 2
return ['#'*width,
'#' + ' '*(width - 2) + '#',
'#' + ' '*margin + banner_text + ' '*margin + '#',
'#' + ' '*(width - 2) + '#',
'#'*width]
log_dir = os.path.join(this_file_dir, 'log')
if not os.path.exists(log_dir):
os.mkdir(log_dir)
main_logfile = os.path.join(log_dir, 'main.log')
total_move_vol = 250.0 # uL
well_vol = 300.0 # uL
layfile = os.path.join(this_file_dir, 'population_dynamics.lay')
lmgr = LayoutManager(layfile)
sys_state = lambda:None # simple namespace
plates = resource_list_with_prefix(lmgr, 'site_top_left_', Plate96, 10)
main_tips = lmgr.assign_unused_resource(ResourceType(Tip96, 'main_tips'))
wet_tips = lmgr.assign_unused_resource(ResourceType(Tip96, 'cross_tips'))
water_trough = lmgr.assign_unused_resource(ResourceType(Plate96, 'water_trough'))
def next_tips_tups():
for column in range(11): # use prime number of columns to avoid sharing factors with other periodic activities
yield [(main_tips, t) for t in range(8*column, 8*(column+1))]
tips_tups_gen = next_tips_tups()
tips_tups = None
wet_prep_plates = len(sys.argv) > 1 and sys.argv[1] == '--wet'
