def test_sub_treatment(self):
t = ptr.FMRITreatment(output_dir=self.tmp_dir)
t.enable_draft_testing()
sub_ts = t.split()
for sub_t in sub_ts:
sub_t.run()
def test_default_treatment_parallel_cluster(self):
if cfg['parallel-cluster']['enable_unit_test'] == 1:
t = ptr.FMRITreatment(make_outputs=False, result_dump_file=None,
output_dir=self.tmp_dir)
t.enable_draft_testing()
t.run(parallel='cluster')
else:
print 'Cluster testing is off '\
'([cluster-LAN][enable_unit_test] = 0 in config.cfg'
def test_default_treatment_parallel_LAN(self):
if cfg['parallel-LAN']['enable_unit_test'] == 1:
t = ptr.FMRITreatment(make_outputs=False, result_dump_file=None,
output_dir=self.tmp_dir)
t.enable_draft_testing()
t.run(parallel='LAN')
else:
print 'LAN testing is off '\
'([parallel-LAN][enable_unit_test] = 0 in ~/.pyhrf/config.cfg'
def test_default_jde_cmd_parallel_local(self):
t = ptr.FMRITreatment(make_outputs=False, result_dump_file=None)
t.enable_draft_testing()
t_fn = op.join(self.tmp_dir, 'treatment.pck')
fout = open(t_fn, 'w')
cPickle.dump(t, fout)
fout.close()
cmd = 'pyhrf_jde_estim -t %s -x local' % t_fn
if os.system(cmd) != 0:
raise Exception('"' + cmd + '" did not execute correctly')
def test_jde_estim_from_treatment_pck(self):
t = ptr.FMRITreatment(make_outputs=False, result_dump_file=None)
t.enable_draft_testing()
sub_ts = t.split()
sub_t_fn = op.join(self.tmp_dir, 'treatment.pck')
fout = open(sub_t_fn, 'w')
cPickle.dump(sub_ts[0], fout)
fout.close()
cmd = 'pyhrf_jde_estim -t %s' % sub_t_fn
if os.system(cmd) != 0:
raise Exception('"' + cmd + '" did not execute correctly')
def test_pickle_treatment(self):
t = ptr.FMRITreatment(make_outputs=False, result_dump_file=None)
t.enable_draft_testing()
cPickle.loads(cPickle.dumps(t))
def test_parallel_local(self):
t = ptr.FMRITreatment(make_outputs=False, result_dump_file=None)
t.enable_draft_testing()
t.run(parallel='local', n_jobs=2)
def test_default_treatment(self):
t = ptr.FMRITreatment(make_outputs=False, result_dump_file=None)
t.enable_draft_testing()
t.run()