_fields_ = [
("core", _bam1_core_t),
("l_data", ctypes.c_int),
("m_data", ctypes.c_int),
("data", ctypes.POINTER(ctypes.c_uint8)),
("id", ctypes.c_uint64),
]
_samFile = _htsFile
# ----------------------------------------------------------------------------
# C functions and their return types
# ----------------------------------------------------------------------------
htslib = pl.load_htslib()
_bam_hdr_init = htslib.bam_hdr_init
_bam_hdr_init.restype = ctypes.POINTER(_bam_hdr_t)
_bam_hdr_read = htslib.bam_hdr_read
_bam_hdr_read.restype = ctypes.POINTER(_bam_hdr_t)
_bam_hdr_write = htslib.bam_hdr_write
_bam_hdr_write.restype = ctypes.c_int
_bam_hdr_destroy = htslib.bam_hdr_destroy
_bam_hdr_destroy.restype = None
_bam_name2id = htslib.bam_name2id
_bam_name2id.restype = ctypes.c_int
('bc', ctypes.c_int32), ('ec', ctypes.c_int32),
('meta_char', ctypes.c_int32), ('line_skip', ctypes.c_int32)]
class _tbx_t(ctypes.Structure):
"""C structure for a tabix index"""
_fields_ = [('conf', _tbx_conf_t), ('idx', ctypes.POINTER(_hts_idx_t)),
('dict', ctypes.c_void_p)]
# ----------------------------------------------------------------------------
# C functions and their return types
# ----------------------------------------------------------------------------
htslib = pl.load_htslib()
_hts_get_bgzfp = htslib.hts_get_bgzfp
_hts_get_bgzfp.restype = ctypes.POINTER(_BGZF)
_tbx_destroy = htslib.tbx_destroy
_tbx_destroy.restype = None
_tbx_index_build = htslib.tbx_index_build
_tbx_index_build.restype = ctypes.c_int
_tbx_index_build2 = htslib.tbx_index_build2
_tbx_index_build2.restype = ctypes.c_int
_tbx_index_load = htslib.tbx_index_load
_tbx_index_load.restype = ctypes.POINTER(_tbx_t)