def setupUi(self, Dialog):
# Based on auto-generated code from ui file
from pymol.Qt import QtCore, QtWidgets
Dialog.resize(400, 50)
self.gridLayout = QtWidgets.QGridLayout(Dialog)
label = QtWidgets.QLabel("Select loaded object:", Dialog)
self.gridLayout.addWidget(label, 0, 0, 1, 1)
self.select_object_combo_box = QtWidgets.QComboBox(Dialog)
sizePolicy = QtWidgets.QSizePolicy(QtWidgets.QSizePolicy.Expanding,
QtWidgets.QSizePolicy.Fixed)
self.select_object_combo_box.setSizePolicy(sizePolicy)
self.select_object_combo_box.setEditable(True)
self.gridLayout.addWidget(self.select_object_combo_box, 0, 1, 1, 1)
label = QtWidgets.QLabel("Select loaded object:", Dialog)
self.gridLayout.addWidget(label, 1, 0, 1, 1)
self.select_object_combo_box2 = QtWidgets.QComboBox(Dialog)
self.select_object_combo_box2.setSizePolicy(sizePolicy)
self.select_object_combo_box2.setEditable(True)
self.gridLayout.addWidget(self.select_object_combo_box2, 1, 1, 1, 1)
self.buttonBox = QtWidgets.QDialogButtonBox(Dialog)
self.buttonBox.setOrientation(QtCore.Qt.Horizontal)
self.buttonBox.setStandardButtons(QtWidgets.QDialogButtonBox.Cancel
| QtWidgets.QDialogButtonBox.Ok)
self.gridLayout.addWidget(self.buttonBox, 2, 0, 1, 2)
self.buttonBox.accepted.connect(Dialog.accept)
self.buttonBox.rejected.connect(Dialog.reject)
def create_combobox_row(self):
"""
Builds a row with two comboboxes an "Add" button for defining a loop.
"""
# First residue combobox.
self.res1_combobox = QtWidgets.QComboBox(
) # Select the starting residue:
for item in self.scrollable_res_list:
self.res1_combobox.addItem(item)
self.res1_combobox.setEditable(False)
self.res1_combobox.setStyleSheet(small_font_style)
self.res1_combobox.setFixedWidth(
self.res1_combobox.sizeHint().width() + self.combobox_padding)
# Second residue combobox.
self.res2_combobox = QtWidgets.QComboBox(
) # Select the ending residue:
for item in self.scrollable_res_list:
self.res2_combobox.addItem(item)
self.res2_combobox.setEditable(False)
self.res2_combobox.setStyleSheet(small_font_style)
self.res2_combobox.setFixedWidth(
self.res2_combobox.sizeHint().width() + self.combobox_padding)
# "Add" button.
self.new_loop_button = QtWidgets.QPushButton("Add")
self.new_loop_button.setStyleSheet(small_font_style)
self.new_loop_button.clicked.connect(self.press_add_button)
self.new_loop_button.setFixedWidth(
self.new_loop_button.sizeHint().width() + self.button_padding)
self.parent.loop_selector_frame_layout.addWidget(
self.res1_combobox, self.row, 0)
self.parent.loop_selector_frame_layout.addWidget(
self.res2_combobox, self.row, 1)
self.parent.loop_selector_frame_layout.addWidget(
self.new_loop_button, self.row, 2)
User_loop_combo_qt.id_counter += 1
def __init__(self, label_text="Input", items=[]):
PyMod_form_item.__init__(self)
# Label.
self.label = QtWidgets.QLabel(label_text)
# Combobox.
self.combobox = QtWidgets.QComboBox()
if not items:
raise ValueError("Please provide a list of items for the combobox")
self.items = items
for item in self.items:
self.combobox.addItem(item)
self.combobox.setEditable(False)
self.input = self.combobox
def load_aln_dialog(parent, filename, format):
_self = parent.cmd
import numpy
import difflib
import pymol.seqalign as seqalign
try:
# for fasta format, this only succeeds if all sequences have the
# same length, raises ValueError otherwise
alignment = seqalign.aln_magic_read(filename)
# a single sequence is not an aligment
if format == "fasta" and len(alignment) < 2:
raise ValueError
except ValueError:
# fasta files which don't contain alignments will be loaded as
# extended structures (fab command) instead
_self.load(filename)
return
# alignment record ids and PyMOL model names
ids = [rec.id for rec in alignment]
ids_remain = list(ids)
models = _self.get_object_list()
models_remain = list(models)
mapping = {}
N = len(ids)
M = len(models)
# ids -> models similarity matrix
similarity = numpy.zeros((N, M))
for i in range(N):
for j in range(M):
similarity[i, j] = difflib.SequenceMatcher(None, ids[i], models[j],
False).ratio()
# guess mapping
for _ in range(min(N, M)):
i, j = numpy.unravel_index(similarity.argmax(), similarity.shape)
mapping[ids_remain.pop(i)] = models_remain.pop(j)
similarity = numpy.delete(similarity, i, axis=0)
similarity = numpy.delete(similarity, j, axis=1)
form = parent.load_form('load_aln')
comboboxes = {}
# mapping GUI
for row, rec_id in enumerate(ids, 1):
label = QtWidgets.QLabel(rec_id, form._dialog)
combobox = QtWidgets.QComboBox(form._dialog)
combobox.addItem("")
combobox.addItems(models)
combobox.setCurrentText(mapping.get(rec_id, ""))
form.layout_mapping.addWidget(label, row, 0)
form.layout_mapping.addWidget(combobox, row, 1)
comboboxes[rec_id] = combobox
def run():
mapping = dict((rec_id, combobox.currentText())
for (rec_id, combobox) in comboboxes.items())
seqalign.load_aln_multi(filename, mapping=mapping, _self=_self)
form._dialog.close()
def cancel():
form._dialog.close()
if format == 'fasta' and QtWidgets.QMessageBox.question(
parent, "Load as structures?",
"Load sequences as extended structures instead?"
) == QtWidgets.QMessageBox.Yes:
_self.load(filename)
# hook up events
form.button_ok.clicked.connect(run)
form.button_cancel.clicked.connect(cancel)
form._dialog.setModal(True)
form._dialog.show()
def load_aln_dialog(parent, filename):
_self = parent.cmd
import numpy
import difflib
import pymol.seqalign as seqalign
try:
alignment = seqalign.aln_magic_read(filename)
except ValueError:
# fails for fasta files which don't contain alignments
_self.load(filename)
return
# alignment record ids and PyMOL model names
ids = [rec.id for rec in alignment]
ids_remain = list(ids)
models = _self.get_object_list()
models_remain = list(models)
mapping = {}
N = len(ids)
M = len(models)
# ids -> models similarity matrix
similarity = numpy.zeros((N, M))
for i in range(N):
for j in range(M):
similarity[i, j] = difflib.SequenceMatcher(None, ids[i], models[j],
False).ratio()
# guess mapping
for _ in range(min(N, M)):
i, j = numpy.unravel_index(similarity.argmax(), similarity.shape)
mapping[ids_remain.pop(i)] = models_remain.pop(j)
similarity = numpy.delete(similarity, i, axis=0)
similarity = numpy.delete(similarity, j, axis=1)
form = parent.load_form('load_aln')
comboboxes = {}
# mapping GUI
for row, rec_id in enumerate(ids, 1):
label = QtWidgets.QLabel(rec_id, form._dialog)
combobox = QtWidgets.QComboBox(form._dialog)
combobox.addItem("")
combobox.addItems(models)
combobox.setCurrentText(mapping.get(rec_id, ""))
form.layout_mapping.addWidget(label, row, 0)
form.layout_mapping.addWidget(combobox, row, 1)
comboboxes[rec_id] = combobox
def run():
mapping = dict((rec_id, combobox.currentText())
for (rec_id, combobox) in comboboxes.items())
seqalign.load_aln_multi(filename, mapping=mapping, _self=_self)
form._dialog.close()
# hook up events
form.button_ok.clicked.connect(run)
form.button_cancel.clicked.connect(form._dialog.close)
form._dialog.setModal(True)
form._dialog.show()
def build_strategy_specific_modes_frames(self):
"""
Build components of the GUI to show the alignment options.
"""
#------------------------------------------
# Perform a profile to profile alignment. -
#------------------------------------------
if self.protocol.can_perform_ptp_alignment:
# profile_profile_rb_text = "Profile to profile: perform a profile to profile alignment."
profile_profile_rb_text = "Profile to profile"
self.profile_to_profile_radiobutton = QtWidgets.QRadioButton(profile_profile_rb_text)
self.profile_to_profile_radiobutton.clicked.connect(self.click_on_profile_to_profile_radio)
self.profile_to_profile_radiobutton._value = "profile-to-profile"
self.profile_to_profile_radiobutton.setChecked(True)
self.alignment_mode_vbox.addWidget(self.profile_to_profile_radiobutton)
self.alignment_mode_button_group.addButton(self.profile_to_profile_radiobutton)
#-----------------------------------------
# Perform sequence to profile alignment. -
#-----------------------------------------
sequence_profile_rb_text = None
build_target_profile_frame = False
# Shows a different label for the checkbutton if there is one or more clusters involved.
if len(self.protocol.selected_clusters_list) > 1:
# sequence_profile_rb_text = "Sequence to profile: align to a target profile the rest of the selected sequences."
sequence_profile_rb_text = "Sequence to profile"
build_target_profile_frame = True
elif len(self.protocol.selected_clusters_list) == 1:
profile_cluster_name = self.protocol.involved_clusters_list[0].my_header
# sequence_profile_rb_text = "Sequence to profile: align the selected sequence to the target profile '%s'." % (profile_cluster_name)
sequence_profile_rb_text = "Sequence to profile"
# Radiobutton.
self.sequence_to_profile_radiobutton = QtWidgets.QRadioButton(sequence_profile_rb_text)
self.sequence_to_profile_radiobutton.clicked.connect(self.click_on_sequence_to_profile_radio)
self.sequence_to_profile_radiobutton._value = "sequence-to-profile"
if not self.protocol.can_perform_ptp_alignment:
self.sequence_to_profile_radiobutton.setChecked(True)
self.alignment_mode_vbox.addWidget(self.sequence_to_profile_radiobutton)
self.alignment_mode_button_group.addButton(self.sequence_to_profile_radiobutton)
# If there is more than one selected cluster, then build a frame to let the user choose
# which is going to be the target profile.
if build_target_profile_frame:
# Frame with the options to choose which is going to be the target profile.
self.target_profile_frame = QtWidgets.QFormLayout()
self.alignment_mode_vbox.addLayout(self.target_profile_frame)
# Label.
self.target_alignment_label = QtWidgets.QLabel("Target profile:")
self.target_alignment_label.setStyleSheet("margin-left: 35px")
# Combobox.
self.target_alignment_combobox = QtWidgets.QComboBox()
for cluster in self.protocol.involved_clusters_list:
self.target_alignment_combobox.addItem(cluster.my_header)
self.target_alignment_combobox.setEditable(False)
self.target_profile_frame.addRow(self.target_alignment_label, self.target_alignment_combobox)
self.target_alignment_combobox.setFixedWidth(self.target_alignment_combobox.sizeHint().width())
def __init__(self, parent=None, app=None):
super(_BuilderPanel, self).__init__(parent)
self.setWindowTitle("Builder")
self.setObjectName("builder")
self.cmd = app.pymol.cmd
self.layout = QtWidgets.QVBoxLayout()
self.setLayout(self.layout)
self.buttons_layout = QtWidgets.QVBoxLayout()
self.tabs = QtWidgets.QTabWidget(self)
self.layout.setContentsMargins(5, 5, 5, 5);
self.layout.setSpacing(5);
self.layout.addWidget(self.tabs)
self.layout.addLayout(self.buttons_layout)
self.layout.addStretch()
self.fragments_layout = QtWidgets.QGridLayout()
self.fragments_layout.setContentsMargins(5, 5, 5, 5);
self.fragments_layout.setSpacing(5);
self.fragments_tab = QtWidgets.QWidget()
self.fragments_tab.setLayout(self.fragments_layout)
self.protein_layout = QtWidgets.QGridLayout()
self.protein_layout.setContentsMargins(5, 5, 5, 5);
self.protein_layout.setSpacing(5);
self.protein_tab = QtWidgets.QWidget()
self.protein_tab.setLayout(self.protein_layout)
self.tabs.addTab(self.fragments_tab, "Chemical")
self.tabs.addTab(self.protein_tab, "Protein")
self.getIcons()
buttons = [
[ ("H", "Hydrogen", lambda: self.replace("H", 1, 1, "Hydrogen")),
("C", "Carbon", lambda: self.replace("C", 4, 4, "Carbon")),
("N", "Nitrogen", lambda: self.replace("N", 4, 3, "Nitrogen")),
("O", "Oxygen", lambda: self.replace("O", 4, 2, "Oxygen")),
("P", "Phosphorus", lambda: self.replace("P",4,3, "Phosphorous")),
("S", "Sulfur", lambda: self.replace("S",2,2, "Sulfur")),
("F", "Fluorine", lambda: self.replace("F",1,1, "Fluorine")),
("Cl", "Chlorrine", lambda: self.replace("Cl",1,1, "Chlorine")),
("Br", "Bromine", lambda: self.replace("Br",1,1, "Bromine")),
("I", "Iodine", lambda: self.replace("I",1,1, "Iodine")),
("-CF3", "Trifluoromethane", lambda: self.replace("trifluoromethane",4,0, "trifluoro")),
("-OMe", "Methanol", lambda: self.replace("methanol",5,0, "methoxy")),
],
[ ("CH4", "Methyl", lambda: self.grow("methane",1,0,"methyl")),
("C=C", "Ethylene", lambda: self.grow("ethylene",4,0,"vinyl")),
("C#C", "Acetylene", lambda: self.grow("acetylene",2,0,"alkynl")),
("C#N", "Cyanide", lambda: self.grow("cyanide",2,0,"cyano")),
("C=O", "Aldehyde", lambda: self.grow("formaldehyde",2,0,"carbonyl",)),
("C=OO", "Formic Acid", lambda: self.grow("formic",4,0,"carboxyl")),
("C=ON", "C->N amide", lambda: self.grow("formamide",5,0,"C->N amide")),
("NC=O", "N->C amide", lambda: self.grow("formamide",3,1,"N->C amide")),
("S=O2", "Sulfone", lambda: self.grow("sulfone",3,1,"sulfonyl")),
("P=O3", "Phosphite", lambda: self.grow("phosphite",4,0,"phosphoryl")),
("N=O2", "Nitro", lambda: self.grow("nitro",3,0,"nitro")),
],
[
("#cyc3", "Cyclopropane", lambda: self.grow("cyclopropane",4,0,"cyclopropyl")),
("#cyc4", "Cyclobutane", lambda: self.grow("cyclobutane",4,0,"cyclobutyl")),
("#cyc5", "Cyclopentane", lambda: self.grow("cyclopentane",5,0,"cyclopentyl")),
("#cyc6", "Cyclohexane", lambda: self.grow("cyclohexane",7,0,"cyclohexyl")),
("#cyc7", "Cycloheptane", lambda: self.grow("cycloheptane",8,0,"cycloheptyl")),
("#aro5", "Cyclopentadiene", lambda: self.grow("cyclopentadiene",5,0,"cyclopentadienyl")),
("#aro6", "Benzene", lambda: self.grow("benzene",6,0,"phenyl")),
("#aro65", "Indane", lambda: self.grow("indane",12,0,"indanyl")),
("#aro66", "Napthylene", lambda: self.grow("napthylene",13,0,"napthyl")),
("#aro67", "Benzocycloheptane", lambda: self.grow("benzocycloheptane",13,0, "benzocycloheptyl")),
]
]
self.btn_icons = {}
requestsize = QtCore.QSize(48, 48)
for row, btn_row in enumerate(buttons):
for col, bb in enumerate(btn_row):
btn_label, btn_tooltip, btn_command = bb
btn = makeFragmentButton()
if btn_label.startswith('#'):
icons = self.icons[btn_label[1:]]
btn.setIcon(icons[0])
btn.setIconSize(icons[1].actualSize(requestsize))
self.btn_icons[btn] = icons
else:
btn.setText(btn_label)
btn.setToolTip(btn_tooltip)
btn.clicked.connect(btn_command)
self.fragments_layout.addWidget(btn, row, col)
buttons = [
[ 'Ace', 'Ala', 'Arg', 'Asn', 'Asp', 'Cys', 'Gln', 'Glu', 'Gly', 'His', 'Ile', 'Leu' ],
[ 'Lys', 'Met', 'Phe', 'Pro', 'Ser', 'Thr', 'Trp', 'Tyr', 'Val', 'NMe', 'NHH' ]
]
for row, btn_row in enumerate(buttons):
for col, btn_label in enumerate(btn_row):
btn = makeFragmentButton()
btn.setText(btn_label)
btn.setToolTip("Build %s residue" % btn_label)
res = btn_label.lower()
slot = lambda val=None, s=self,r=res: s.attach(r)
btn.clicked.connect(slot)
self.protein_layout.addWidget(btn, row, col)
lab = QtWidgets.QLabel('Secondary Structure:')
lab_cols = 3
self.ss_cbox = QtWidgets.QComboBox()
self.ss_cbox.addItem("Alpha Helix")
self.ss_cbox.addItem("Beta Sheet (Anti-Parallel)")
self.ss_cbox.addItem("Beta Sheet (Parallel)")
self.protein_layout.addWidget(lab, 2, 0, 1, lab_cols)
self.protein_layout.addWidget(self.ss_cbox, 2, lab_cols, 1, 4)
self.ss_cbox.currentIndexChanged[int].connect(self.ssIndexChanged)
buttons = [
[
( "@Atoms:", None, None),
( "Fix H", "Fix hydrogens on picked atoms", self.fixH),
( "Add H", "Add hydrogens to entire molecule", self.addH),
( "Invert", "Invert stereochemistry around pk1 (pk2 and pk3 will remain fixed)", self.invert),
( "Delete", "Remove atoms", self.removeAtom),
( "Clear", "Delete everything", self.clear),
( "@ Charge:", None, None),
( " +1 ", "Positive Charge", lambda: self.setCharge(1,"+1")),
( " 0 ", "Neutral Charge", lambda: self.setCharge(0,"neutral")),
( " -1 ", "Negative Charge", lambda: self.setCharge(-1,"-1")),
],
[
( "@Bonds:", None, None),
( "Create", "Create bond between pk1 and pk2", self.createBond),
( "Delete", "Delete bond between pk1 and pk2", self.deleteBond),
( "Cycle", "Cycle bond valence", self.cycleBond),
( " | ", "Create single bond", lambda: self.setOrder("1", "single")),
( " || ", "Create double bond", lambda: self.setOrder("2", "double")),
( " ||| ", "Create triple bond", lambda: self.setOrder("3", "triple")),
( "Arom", "Create aromatic bond", lambda: self.setOrder("4", "aromatic")),
( "@ Model:", None, None),
( "Clean", "Cleanup structure", self.clean),
( "Sculpt", "Molecular sculpting", self.sculpt),
( "Fix", "Fix atom positions", self.fix),
( "Rest", "Restrain atom positions", self.rest),
],
[
( "$El-stat", "Electrostatics term for 'Clean' action", "clean_electro_mode"),
( "@ ", None, None),
( "$Bumps", "Show VDW contacts during sculpting", "sculpt_vdw_vis_mode"),
( "@ ", None, None),
( "#Undo Enabled", "", "suspend_undo"),
( "Undo", "Undo last change", self.undo),
( "Redo", "Redo last change", self.redo),
]
]
for row, btn_row in enumerate(buttons):
btn_row_layout = QtWidgets.QHBoxLayout()
self.buttons_layout.addLayout(btn_row_layout)
for col, bb in enumerate(btn_row):
btn_label, btn_tooltip, btn_command = bb
if btn_label[0] == '@':
btn = QtWidgets.QLabel(btn_label[1:])
elif btn_label[0] in ('#', '$'):
btn = QtWidgets.QCheckBox(btn_label[1:])
setting = btn_command
value = self.cmd.get_setting_int(setting)
if btn_label[0] == '$':
btn.setChecked(bool(value))
@btn.toggled.connect
def _(checked, n=setting):
self.cmd.set(n, checked, quiet=0)
else:
btn.setChecked(not value)
@btn.toggled.connect
def _(checked, n=setting):
self.cmd.set(n, not checked, quiet=0)
else:
btn = makeFragmentButton()
btn.setText(btn_label)
btn.clicked.connect(btn_command)
if btn_tooltip:
btn.setToolTip(btn_tooltip)
btn_row_layout.addWidget(btn)
btn_row_layout.addStretch()
def __init__(self, parent=None):
super(SurfStampFrame, self).__init__(parent)
self.layout = QtWidgets.QVBoxLayout()
self.setLayout(self.layout)
glayout1 = QtWidgets.QGridLayout()
self.label_message = QtWidgets.QLabel(self)
self.label_message.setText("SurfStamp PyMOL plugin")
self.layout.addWidget(self.label_message)
self.combo_model = QtWidgets.QComboBox()
self.combo_model.addItems([])
self.layout.addWidget(self.combo_model)
self.label_reso = QtWidgets.QLabel(self)
self.label_reso.setText("Surface Resolution")
glayout1.addWidget(self.label_reso, 1, 0)
self.spin_reso = QtWidgets.QDoubleSpinBox(self)
self.spin_reso.setRange(0.1, 1.0)
self.spin_reso.setSingleStep(0.05)
self.spin_reso.setValue(0.7)
glayout1.addWidget(self.spin_reso, 1, 1)
self.label_imagesize = QtWidgets.QLabel(self)
self.label_imagesize.setText("Image Size")
glayout1.addWidget(self.label_imagesize, 2, 0)
self.spin_imagesize = QtWidgets.QSpinBox(self)
self.spin_imagesize.setRange(1000, 10000)
#PILLOW？は 13000 くらいが Max っぽい
self.spin_imagesize.setSingleStep(100)
self.spin_imagesize.setValue(4000)
glayout1.addWidget(self.spin_imagesize, 2, 1)
self.label_fontsize = QtWidgets.QLabel(self)
self.label_fontsize.setText("Font Size")
glayout1.addWidget(self.label_fontsize, 3, 0)
self.spin_fontsize = QtWidgets.QSpinBox(self)
self.spin_fontsize.setRange(3, 100)
self.spin_fontsize.setSingleStep(1)
self.spin_fontsize.setValue(20)
glayout1.addWidget(self.spin_fontsize, 3, 1)
glayout2 = QtWidgets.QGridLayout()
self.check_outline = QtWidgets.QCheckBox('Outline')
self.check_outline.setChecked(True)
glayout2.addWidget(self.check_outline, 0, 0)
self.check_nowater = QtWidgets.QCheckBox('Remove Waters')
self.check_nowater.setChecked(True)
glayout2.addWidget(self.check_nowater, 0, 1)
self.check_colorall = QtWidgets.QCheckBox('Color All')
self.check_colorall.setChecked(False)
glayout2.addWidget(self.check_colorall, 1, 0)
self.check_tile = QtWidgets.QCheckBox('Repeating Tile')
self.check_tile.clicked.connect(self.checkTileOn)
self.check_tile.setChecked(False)
glayout2.addWidget(self.check_tile, 1, 1)
self.check_oneletter = QtWidgets.QCheckBox('One Letter')
glayout2.addWidget(self.check_oneletter, 2, 0)
self.check_nochainname = QtWidgets.QCheckBox('No Chain Name')
glayout2.addWidget(self.check_nochainname, 2, 1)
self.check_ignore_occupancy = QtWidgets.QCheckBox('Ignore Occupancy')
glayout2.addWidget(self.check_ignore_occupancy, 3, 0)
self.check_cartoon = QtWidgets.QCheckBox('Cartoon')
self.check_cartoon.clicked.connect(self.checkCartoonOn)
glayout2.addWidget(self.check_cartoon, 3, 1)
self.check_mmcif = QtWidgets.QCheckBox('Use MMCIF')
glayout2.addWidget(self.check_mmcif, 4, 0)
self.check_builtin = QtWidgets.QCheckBox('Built-in Surface Generator')
glayout2.addWidget(self.check_builtin, 4, 1)
self.check_builtin.clicked.connect(self.checkBuiltinOn)
#MMCIF は AUTH が不完全だ！
#self.check_label = QtWidgets.QCheckBox('ID Label');
#self.layout.addWidget(self.check_label);
# Text field for output file
glayout4 = QtWidgets.QVBoxLayout()
self.label_outprefix = QtWidgets.QLabel(
'Output Prefix (Prefix+<something> will be overwritten.)')
glayout4.addWidget(self.label_outprefix)
glayout4b = QtWidgets.QGridLayout()
self.text_outprefix = QtWidgets.QLineEdit(self)
self.text_outprefix.setReadOnly(True)
glayout4b.addWidget(self.text_outprefix, 0, 0)
self.button_outprefix = QtWidgets.QPushButton(self)
self.button_outprefix.setText("Save As")
self.button_outprefix.clicked.connect(self.getFile)
self.text_outprefix.setStyleSheet("background-color: lightgray;")
glayout4b.addWidget(self.button_outprefix, 0, 1)
glayout4.addLayout(glayout4b)
glayout3 = QtWidgets.QGridLayout()
self.button_ok = QtWidgets.QPushButton('Create')
self.button_ok.clicked.connect(self.runSurfStamp)
glayout3.addWidget(self.button_ok, 0, 0)
self.button_close = QtWidgets.QPushButton('Close')
self.button_close.clicked.connect(self.hide)
glayout3.addWidget(self.button_close, 0, 1)
self.layout.addLayout(glayout1)
self.layout.addLayout(glayout2)
self.layout.addLayout(glayout4)
self.layout.addLayout(glayout3)
screengeom = QtWidgets.qApp.desktop().screenGeometry()
wwidth = 300
hheight = 200
self.setGeometry(screengeom.width() / 2 - wwidth / 2,
screengeom.height() / 2 - hheight / 2, wwidth,
hheight)
self.setWindowTitle('SurfStamp')
self.checkTileOn()
self.checkBuiltinOn()
self.checkCartoonOn()
self.show()