コード例 #1
0
ファイル: chainbow_obj.py プロジェクト: sbliven/dotfiles
def chainbow_obj(selection="(all)"):
    """DESCRIPTION

    Colors each chain as a rainbow from N (blue) to C (red)

USAGE

    chainbow_obj [selection]

ARGUMENTS

    selection = the objects to be colored

NOTES

    Any objects present in the selection will be recolored completely. There is no
    way to color only part of an object.

EXAMPLES

AUTHOR

    Spencer Bliven
"""

    for object in cmd.get_object_list(selection):
        util.chainbow(object)
コード例 #2
0
ファイル: demo.py プロジェクト: Clayton-Toste/Surface-Anaysis
 def anime(self, cleanup=0):
     self.interrupt = cleanup
     suspend_undo = self.cmd.get("suspend_undo")
     self.cmd.set("suspend_undo", 1, updates=0)
     if not cleanup:
         try:
             self.cmd.set("suspend_updates", 1, quiet=1)
             self.cmd.disable()
             self.cmd.load("$TUT/1hpv.pdb")
             util.chainbow("1hpv", _self=self.cmd)
             self.cmd.hide("everything", "1hpv")
             self.cmd.show("cartoon", "1hpv")
             self.cmd.show("sticks", "1hpv///200/")
             self.cmd.create("1hpv_a", "1hpv//A//")
             self.cmd.set("cartoon_smooth_loops", 0, "1hpv_a")
             self.cmd.create("1hpv_b", "1hpv//B//")
             self.cmd.set("cartoon_smooth_loops", 0, "1hpv_b")
             self.cmd.create("1hpv_l", "1hpv///200/")
             util.cbay("1hpv_l", _self=self.cmd)
             self.cmd.delete("1hpv")
             self.cmd.set_view ((\
       0.374249548,   -0.517475128,    0.769516647,\
       -0.214397043,   -0.855623126,   -0.471108317,\
       0.902203023,    0.011330833,   -0.431161582,\
       -0.000023194,   -0.000007302, -125.089942932,\
       11.953758240,   20.323493958,    8.406080246,\
       75.304412842,  189.396347046,    0.000000000 ))
             self.cmd.translate([-20, 0, 0], object="1hpv_a")
             self.cmd.translate([20, 0, 0], object="1hpv_b")
             self.cmd.zoom("center", 30)
             self.cmd.translate([0, 10, 00], object="1hpv_l")
         finally:
             self.cmd.set("suspend_updates", 0, quiet=1)
         self.cmd.refresh()
         for a in range(1, 21):
             if self.interrupt:
                 break
             try:
                 self.cmd.set("suspend_updates", 1, quiet=1)
                 self.cmd.translate([1, 0, 0], object="1hpv_a")
                 self.cmd.translate([-1, 0, 0], object="1hpv_b")
                 self.cmd.translate([0, -0.5, 0], object="1hpv_l")
             finally:
                 self.cmd.set("suspend_updates", 0, quiet=1)
             self.cmd.refresh()
         for a in range(1, 62):
             if self.interrupt:
                 break
             self.cmd.turn("y", 6)
             self.cmd.move('z', 2)
             self.cmd.move('y', -0.12)
             self.cmd.refresh()
     else:
         self.cmd.delete("1hpv_*")
     self.cmd.set("suspend_undo", suspend_undo, updates=0)
コード例 #3
0
ファイル: demo.py プロジェクト: Almad/pymol
 def anime(self,cleanup=0):
     if not cleanup:
         try:
             self.cmd.set("suspend_updates",1,quiet=1)
             self.cmd.disable()
             self.cmd.load("$TUT/1hpv.pdb")
             util.chainbow("1hpv",_self=self.cmd)
             self.cmd.hide("everything","1hpv")
             self.cmd.show("cartoon","1hpv")
             self.cmd.show("sticks","1hpv///200/")
             self.cmd.create("1hpv_a","1hpv//A//")
             self.cmd.set("cartoon_smooth_loops",0,"1hpv_a")
             self.cmd.create("1hpv_b","1hpv//B//")
             self.cmd.set("cartoon_smooth_loops",0,"1hpv_b")
             self.cmd.create("1hpv_l","1hpv///200/")
             util.cbay("1hpv_l",_self=self.cmd)
             self.cmd.delete("1hpv")
             self.cmd.set_view ((\
       0.374249548,   -0.517475128,    0.769516647,\
       -0.214397043,   -0.855623126,   -0.471108317,\
       0.902203023,    0.011330833,   -0.431161582,\
       -0.000023194,   -0.000007302, -125.089942932,\
       11.953758240,   20.323493958,    8.406080246,\
       75.304412842,  189.396347046,    0.000000000 ))
             self.cmd.translate([-20,0,0],object="1hpv_a")
             self.cmd.translate([20,0,0],object="1hpv_b")
             self.cmd.zoom("center",30)
             self.cmd.translate([0,10,00],object="1hpv_l")
         finally:
             self.cmd.set("suspend_updates",0,quiet=1)
         self.cmd.refresh()
         for a in range(1,21):
             try:
                 self.cmd.set("suspend_updates",1,quiet=1)
                 self.cmd.translate([1,0,0],object="1hpv_a")
                 self.cmd.translate([-1,0,0],object="1hpv_b")
                 self.cmd.translate([0,-0.5,0],object="1hpv_l")
             finally:
                 self.cmd.set("suspend_updates",0,quiet=1)
             self.cmd.refresh()
         for a in range(1,62):
             self.cmd.turn("y",6)
             self.cmd.move('z',2)
             self.cmd.move('y',-0.12)
             self.cmd.refresh()
                             
     else:
         self.cmd.delete("1hpv_*")