def methods(self, methods='*', **kwargs):
if methods == '*':
return reps.known()
selected = []
methods = set(methods)
for name, klass in reps.known():
if name in methods:
selected.append((name, klass))
return selected
def representatives(self, release_id, resolution, **kwargs):
def empty():
known = [name for name, _ in reps.known()]
return dict(zip(known, [False] * len(known)))
data = coll.defaultdict(empty)
for chains in self.chains(release_id, resolution):
for method, klass in reps.known():
finder = klass(self.config, self.session)
rep = finder(chains)
data[rep['id']][method] = True
return data
def headers(self):
known = sorted(name for name, _ in reps.known())
return [
'Group',
'Release',
'PDB',
'IFE',
'BP',
'NT',
'Ratio',
'Current',
] + known
def methods(self):
"""Get the known methods for selecting a representative.
"""
if not hasattr(self, '_methods'):
self._methods = set(n for n, k in reps.known())
return self._methods
def methods(self):
"""Get the known methods for selecting a representative.
"""
if not hasattr(self, '_methods'):
self._methods = set(n for n, k in reps.known())
return self._methods
def empty():
known = [name for name, _ in reps.known()]
return dict(zip(known, [False] * len(known)))