def test_fill_peaks(im_i, peak_list):
filled_peak_list = fill_peaks(im_i, peak_list, 10.0)
assert is_peak_list(filled_peak_list)
# Errors
for obj in [test_dict, *test_sequences, *test_numbers, test_string]:
with pytest.raises(TypeError):
fill_peaks(im_i, obj, 10.0)
for obj in [test_dict, *test_sequences, test_string, test_int]:
with pytest.raises(TypeError):
fill_peaks(im_i, peak_list, obj)
def test_sele_peaks_by_rt(filtered_peak_list):
selected_peaks = sele_peaks_by_rt(filtered_peak_list, ("12m", "13m"))
assert is_peak_list(selected_peaks)
assert len(selected_peaks) == 18
peak = selected_peaks[0]
assert isinstance(peak, Peak)
uid = peak.UID
assert uid == '68-54-26-722.30'
assert peak.get_third_highest_mz() == 50
assert peak.bounds == [0, 683, 0]
assert peak.get_int_of_ion(100) == 0.0
assert peak.rt == 722.299976349
assert peak.ic_mass is None
assert peak.top_ions(10)[0] == 133
peak.null_mass(73)
index_73 = peak.mass_spectrum.mass_list.index(73)
assert peak.mass_spectrum.mass_spec[index_73] == 0
peak.crop_mass(100, 200)
assert peak.UID != uid
with pytest.raises(TypeError):
sele_peaks_by_rt(filtered_peak_list, [1.2, 3.4])
with pytest.raises(ValueError):
sele_peaks_by_rt(filtered_peak_list, ["50s", "10s"])
# Errors
for obj in [test_dict, *test_sequences, *test_numbers, test_string]:
with pytest.raises(TypeError):
sele_peaks_by_rt(obj, ("12m", "13m"))
for obj in [test_dict, *test_numbers, test_string]:
with pytest.raises(TypeError):
sele_peaks_by_rt(filtered_peak_list, obj)
for obj in [*test_sequences]:
with pytest.raises(ValueError):
sele_peaks_by_rt(filtered_peak_list, obj)
def test_is_peak_list(peak_list, ms, im_i, data):
assert is_peak_list(peak_list)
assert not is_peak_list(test_int)
assert not is_peak_list(test_string)
assert not is_peak_list(test_float)
assert not is_peak_list(test_list_strs)
assert not is_peak_list(test_list_ints)
assert not is_peak_list(test_tuple)
assert not is_peak_list(test_dict)
assert not is_peak_list(ms)
assert not is_peak_list(im_i)
assert not is_peak_list(data)