def test_composite_peak(filtered_peak_list, im_i):
print(".", end='')
composite_peak_list = filtered_peak_list[10:20]
print(".", end='')
peak = composite_peak(composite_peak_list)
print(".", end='')
assert isinstance(peak, Peak)
uid = peak.UID
assert uid == '96-69-62-47.73'
assert peak.get_third_highest_mz() == 57
assert peak.bounds is None
assert peak.get_int_of_ion(100) == 3.603215488138507
assert peak.rt == 47.727200388899995
assert peak.ic_mass is None
assert peak.top_ions(10)[0] == 115
# area = peak_sum_area(im_i, peak)
# peak.area = area
# assert peak.area == area
assert isinstance(peak.mass_spectrum, MassSpectrum)
assert isinstance(peak.mass_spectrum.mass_spec, list)
peak.null_mass(73)
index_73 = peak.mass_spectrum.mass_list.index(73)
assert peak.mass_spectrum.mass_spec[index_73] == 0
peak.crop_mass(100, 200)
assert peak.UID != uid
# Errors
for obj in [test_dict, *test_sequences, *test_numbers, test_string]:
with pytest.raises(TypeError):
composite_peak(obj)
def test_composite_peak_outliers(filtered_peak_list, im_i):
composite_peak_list = filtered_peak_list[10:13]
peak = composite_peak(composite_peak_list, ignore_outliers=True)
assert isinstance(peak, Peak)
uid = peak.UID
assert uid == '88-86-92-39.07'
assert peak.get_third_highest_mz() == 85
assert peak.bounds is None
assert peak.get_int_of_ion(100) == 7.1236965120460285
assert peak.rt == 39.0680015087
assert peak.ic_mass is None
assert peak.top_ions(10)[0] == 161
# area = peak_sum_area(im_i, peak)
# peak.area = area
# assert peak.area == area
peak.null_mass(73)
index_73 = peak.mass_spectrum.mass_list.index(73)
assert peak.mass_spectrum.mass_spec[index_73] == 0
peak.crop_mass(100, 200)
assert peak.UID != uid