from pyomexmeta import RDF
# collect the link from "https://www.ebi.ac.uk/biomodels/BIOMD0000000308#Files"
tyson2003 = "https://www.ebi.ac.uk/biomodels/model/download/BIOMD0000000308.2?filename=BIOMD0000000308_url.xml"
# download the model, scan document for annotations and docs-build a graph
rdf = RDF.from_uri(tyson2003, format="rdfxml")
print(f"Number of annotations in graph: {len(rdf)}")
import os
from pyomexmeta import RDF, eUriType
# get the link to teusink2000
teusink_biomod_link = r"https://www.ebi.ac.uk/biomodels/model/download/BIOMD0000000064.2?filename=BIOMD0000000064_url.xml"
# download model xml, scan for rdf, create rdf graph and store in sqlite database
rdf = RDF.from_uri(teusink_biomod_link, format="rdfxml",
storage_type="sqlite", storage_name="TeusinkAnnotations2000",
storage_options="new='yes'")
# do a search for all annotations with glucode as resource: CHEBI:17234
query_string = """
SELECT ?x ?y
WHERE {
?x ?y <http://identifiers.org/obo.chebi/CHEBI:17234>
}
"""
results_formats = [
"xml",
"json",
"table",
"csv",
"mkr",
"tsv",
"html",
"turtle",
"rdfxml",
]
from pyomexmeta import RDF, eUriType
# collect the link from "https://www.ebi.ac.uk/biomodels/BIOMD0000000308#Files"
tyson2003 = "https://www.ebi.ac.uk/biomodels/model/download/BIOMD0000000308.2?filename=BIOMD0000000308_url.xml"
# download the model, scan document for annotations and docs-build a graph
rdf = RDF.from_uri(tyson2003, syntax="rdfxml")
print(f"Number of annotations in graph: {len(rdf)}")