コード例 #1
0
ファイル: select_ci_spin0_symm.py プロジェクト: v3op01/pyscf
def contract_2e(eri, civec_strs, norb, nelec, link_index=None, orbsym=None):
    ci_coeff, nelec, ci_strs = select_ci._unpack(civec_strs, nelec)
    if link_index is None:
        link_index = select_ci._all_linkstr_index(ci_strs, norb, nelec)
    cd_indexa, dd_indexa, cd_indexb, dd_indexb = link_index
    na, nlinka = nb, nlinkb = cd_indexa.shape[:2]
    ma, mlinka = mb, mlinkb = dd_indexa.shape[:2]

    eri = ao2mo.restore(1, eri, norb)
    eri1 = eri.transpose(0, 2, 1, 3) - eri.transpose(0, 2, 3, 1)
    idx, idy = numpy.tril_indices(norb, -1)
    idx = idx * norb + idy
    eri1 = lib.take_2d(eri1.reshape(norb**2, -1), idx, idx) * 2
    lib.transpose_sum(eri1, inplace=True)
    eri1 *= .5
    eri1, dd_indexa, dimirrep = select_ci_symm.reorder4irrep(
        eri1, norb, dd_indexa, orbsym, -1)
    fcivec = ci_coeff.reshape(na, nb)
    ci1 = numpy.zeros_like(fcivec)
    # (aa|aa)
    if nelec[0] > 1:
        libfci.SCIcontract_2e_aaaa_symm(
            eri1.ctypes.data_as(ctypes.c_void_p),
            fcivec.ctypes.data_as(ctypes.c_void_p),
            ci1.ctypes.data_as(ctypes.c_void_p), ctypes.c_int(norb),
            ctypes.c_int(na), ctypes.c_int(nb), ctypes.c_int(ma),
            ctypes.c_int(mlinka), dd_indexa.ctypes.data_as(ctypes.c_void_p),
            dimirrep.ctypes.data_as(ctypes.c_void_p),
            ctypes.c_int(len(dimirrep)))

    h_ps = numpy.einsum('pqqs->ps', eri) * (.5 / nelec[0])
    eri1 = eri.copy()
    for k in range(norb):
        eri1[:, :, k, k] += h_ps
        eri1[k, k, :, :] += h_ps
    eri1 = ao2mo.restore(4, eri1, norb)
    lib.transpose_sum(eri1, inplace=True)
    eri1 *= .5
    eri1, cd_indexa, dimirrep = direct_spin1_symm.reorder4irrep(
        eri1, norb, cd_indexa, orbsym)
    # (bb|aa)
    libfci.SCIcontract_2e_bbaa_symm(eri1.ctypes.data_as(ctypes.c_void_p),
                                    fcivec.ctypes.data_as(ctypes.c_void_p),
                                    ci1.ctypes.data_as(ctypes.c_void_p),
                                    ctypes.c_int(norb), ctypes.c_int(na),
                                    ctypes.c_int(nb), ctypes.c_int(nlinka),
                                    ctypes.c_int(nlinkb),
                                    cd_indexa.ctypes.data_as(ctypes.c_void_p),
                                    cd_indexa.ctypes.data_as(ctypes.c_void_p),
                                    dimirrep.ctypes.data_as(ctypes.c_void_p),
                                    ctypes.c_int(len(dimirrep)))

    lib.transpose_sum(ci1, inplace=True)
    return select_ci._as_SCIvector(ci1.reshape(ci_coeff.shape), ci_strs)
コード例 #2
0
ファイル: select_ci_spin0_symm.py プロジェクト: eronca/pyscf
def contract_2e(eri, civec_strs, norb, nelec, link_index=None, orbsym=None):
    ci_coeff, nelec, ci_strs = select_ci._unpack(civec_strs, nelec)
    if link_index is None:
        link_index = select_ci._all_linkstr_index(ci_strs, norb, nelec)
    cd_indexa, dd_indexa, cd_indexb, dd_indexb = link_index
    na, nlinka = nb, nlinkb = cd_indexa.shape[:2]
    ma, mlinka = mb, mlinkb = dd_indexa.shape[:2]

    eri = ao2mo.restore(1, eri, norb)
    eri1 = eri.transpose(0,2,1,3) - eri.transpose(0,2,3,1)
    idx,idy = numpy.tril_indices(norb, -1)
    idx = idx * norb + idy
    eri1 = lib.take_2d(eri1.reshape(norb**2,-1), idx, idx) * 2
    lib.transpose_sum(eri1, inplace=True)
    eri1 *= .5
    eri1, dd_indexa, dimirrep = select_ci_symm.reorder4irrep_minors(eri1, norb, dd_indexa, orbsym)
    fcivec = ci_coeff.reshape(na,nb)
    ci1 = numpy.zeros_like(fcivec)
    # (aa|aa)
    if nelec[0] > 1:
        libfci.SCIcontract_2e_aaaa_symm(eri1.ctypes.data_as(ctypes.c_void_p),
                                        fcivec.ctypes.data_as(ctypes.c_void_p),
                                        ci1.ctypes.data_as(ctypes.c_void_p),
                                        ctypes.c_int(norb),
                                        ctypes.c_int(na), ctypes.c_int(nb),
                                        ctypes.c_int(ma), ctypes.c_int(mlinka),
                                        dd_indexa.ctypes.data_as(ctypes.c_void_p),
                                        dimirrep.ctypes.data_as(ctypes.c_void_p),
                                        ctypes.c_int(len(dimirrep)))

    h_ps = numpy.einsum('pqqs->ps', eri) * (.5/nelec[0])
    eri1 = eri.copy()
    for k in range(norb):
        eri1[:,:,k,k] += h_ps
        eri1[k,k,:,:] += h_ps
    eri1 = ao2mo.restore(4, eri1, norb)
    lib.transpose_sum(eri1, inplace=True)
    eri1 *= .5
    eri1, cd_indexa, dimirrep = direct_spin1_symm.reorder4irrep(eri1, norb, cd_indexa, orbsym)
    # (bb|aa)
    libfci.SCIcontract_2e_bbaa_symm(eri1.ctypes.data_as(ctypes.c_void_p),
                                    fcivec.ctypes.data_as(ctypes.c_void_p),
                                    ci1.ctypes.data_as(ctypes.c_void_p),
                                    ctypes.c_int(norb),
                                    ctypes.c_int(na), ctypes.c_int(nb),
                                    ctypes.c_int(nlinka), ctypes.c_int(nlinkb),
                                    cd_indexa.ctypes.data_as(ctypes.c_void_p),
                                    cd_indexa.ctypes.data_as(ctypes.c_void_p),
                                    dimirrep.ctypes.data_as(ctypes.c_void_p),
                                    ctypes.c_int(len(dimirrep)))

    lib.transpose_sum(ci1, inplace=True)
    return select_ci._as_SCIvector(ci1.reshape(ci_coeff.shape), ci_strs)
コード例 #3
0
def contract_2e(eri, civec_strs, norb, nelec, link_index=None, orbsym=None):
    ci_coeff, nelec, ci_strs = select_ci._unpack(civec_strs, nelec)
    if link_index is None:
        link_index = select_ci._all_linkstr_index(ci_strs, norb, nelec)
    cd_indexa, dd_indexa, cd_indexb, dd_indexb = link_index
    na, nlinka = cd_indexa.shape[:2]
    nb, nlinkb = cd_indexb.shape[:2]
    ma, mlinka = dd_indexa.shape[:2]
    mb, mlinkb = dd_indexb.shape[:2]

    eri = ao2mo.restore(1, eri, norb)
    eri1 = eri.transpose(0,2,1,3) - eri.transpose(0,2,3,1)
    idx,idy = numpy.tril_indices(norb, -1)
    idx = idx * norb + idy
    eri1 = lib.take_2d(eri1.reshape(norb**2,-1), idx, idx) * 2
    eri1, dd_indexa, dimirrep = reorder4irrep(eri1, norb, dd_indexa, orbsym, -1)
    dd_indexb = reorder4irrep(eri1, norb, dd_indexb, orbsym, -1)[1]
    fcivec = ci_coeff.reshape(na,nb)
    # (bb|bb)
    if nelec[1] > 1:
        fcivecT = lib.transpose(fcivec)
        ci1T = numpy.zeros((nb,na))
        libfci.SCIcontract_2e_aaaa_symm(eri1.ctypes.data_as(ctypes.c_void_p),
                                        fcivecT.ctypes.data_as(ctypes.c_void_p),
                                        ci1T.ctypes.data_as(ctypes.c_void_p),
                                        ctypes.c_int(norb),
                                        ctypes.c_int(nb), ctypes.c_int(na),
                                        ctypes.c_int(mb), ctypes.c_int(mlinkb),
                                        dd_indexb.ctypes.data_as(ctypes.c_void_p),
                                        dimirrep.ctypes.data_as(ctypes.c_void_p),
                                        ctypes.c_int(len(dimirrep)))
        ci1 = lib.transpose(ci1T, out=fcivecT)
    else:
        ci1 = numpy.zeros_like(fcivec)
    # (aa|aa)
    if nelec[0] > 1:
        libfci.SCIcontract_2e_aaaa_symm(eri1.ctypes.data_as(ctypes.c_void_p),
                                        fcivec.ctypes.data_as(ctypes.c_void_p),
                                        ci1.ctypes.data_as(ctypes.c_void_p),
                                        ctypes.c_int(norb),
                                        ctypes.c_int(na), ctypes.c_int(nb),
                                        ctypes.c_int(ma), ctypes.c_int(mlinka),
                                        dd_indexa.ctypes.data_as(ctypes.c_void_p),
                                        dimirrep.ctypes.data_as(ctypes.c_void_p),
                                        ctypes.c_int(len(dimirrep)))

    h_ps = numpy.einsum('pqqs->ps', eri)
    eri1 = eri * 2
    for k in range(norb):
        eri1[:,:,k,k] += h_ps/nelec[0]
        eri1[k,k,:,:] += h_ps/nelec[1]
    eri1 = ao2mo.restore(4, eri1, norb)
    eri1, cd_indexa, dimirrep = reorder4irrep(eri1, norb, cd_indexa, orbsym)
    cd_indexb = reorder4irrep(eri1, norb, cd_indexb, orbsym)[1]
    # (bb|aa)
    libfci.SCIcontract_2e_bbaa_symm(eri1.ctypes.data_as(ctypes.c_void_p),
                                    fcivec.ctypes.data_as(ctypes.c_void_p),
                                    ci1.ctypes.data_as(ctypes.c_void_p),
                                    ctypes.c_int(norb),
                                    ctypes.c_int(na), ctypes.c_int(nb),
                                    ctypes.c_int(nlinka), ctypes.c_int(nlinkb),
                                    cd_indexa.ctypes.data_as(ctypes.c_void_p),
                                    cd_indexb.ctypes.data_as(ctypes.c_void_p),
                                    dimirrep.ctypes.data_as(ctypes.c_void_p),
                                    ctypes.c_int(len(dimirrep)))

    return select_ci._as_SCIvector(ci1.reshape(ci_coeff.shape), ci_strs)