コード例 #1
0
    def quiver3d(self,
                 x,
                 y,
                 z,
                 u,
                 v,
                 w,
                 color,
                 scale,
                 mode,
                 resolution=8,
                 glyph_height=None,
                 glyph_center=None,
                 glyph_resolution=None,
                 opacity=1.0,
                 scale_mode='none',
                 scalars=None,
                 backface_culling=False,
                 line_width=2.,
                 name=None):
        with warnings.catch_warnings():
            warnings.filterwarnings("ignore", category=FutureWarning)
            factor = scale
            vectors = np.c_[u, v, w]
            points = np.vstack(np.c_[x, y, z])
            n_points = len(points)
            offset = np.arange(n_points) * 3
            cell_type = np.full(n_points, vtk.VTK_VERTEX)
            cells = np.c_[np.full(n_points, 1), range(n_points)]
            grid = UnstructuredGrid(offset, cells, cell_type, points)
            grid.point_arrays['vec'] = vectors
            if scale_mode == 'scalar':
                grid.point_arrays['mag'] = np.array(scalars)
                scale = 'mag'
            else:
                scale = False
            if mode == '2darrow':
                return _arrow_glyph(grid, factor)
            elif mode == 'arrow' or mode == '3darrow':
                self.plotter.add_mesh(grid.glyph(orient='vec',
                                                 scale=scale,
                                                 factor=factor),
                                      color=color,
                                      opacity=opacity,
                                      backface_culling=backface_culling)
            elif mode == 'cone':
                cone = vtk.vtkConeSource()
                if glyph_height is not None:
                    cone.SetHeight(glyph_height)
                if glyph_center is not None:
                    cone.SetCenter(glyph_center)
                if glyph_resolution is not None:
                    cone.SetResolution(glyph_resolution)
                cone.Update()

                geom = cone.GetOutput()
                self.plotter.add_mesh(grid.glyph(orient='vec',
                                                 scale=scale,
                                                 factor=factor,
                                                 geom=geom),
                                      color=color,
                                      opacity=opacity,
                                      backface_culling=backface_culling)

            elif mode == 'cylinder':
                cylinder = vtk.vtkCylinderSource()
                cylinder.SetHeight(glyph_height)
                cylinder.SetRadius(0.15)
                cylinder.SetCenter(glyph_center)
                cylinder.SetResolution(glyph_resolution)
                cylinder.Update()

                # fix orientation
                tr = vtk.vtkTransform()
                tr.RotateWXYZ(90, 0, 0, 1)
                trp = vtk.vtkTransformPolyDataFilter()
                trp.SetInputData(cylinder.GetOutput())
                trp.SetTransform(tr)
                trp.Update()

                geom = trp.GetOutput()
                self.plotter.add_mesh(grid.glyph(orient='vec',
                                                 scale=scale,
                                                 factor=factor,
                                                 geom=geom),
                                      color=color,
                                      opacity=opacity,
                                      backface_culling=backface_culling)
コード例 #2
0
ファイル: _pyvista.py プロジェクト: Vlad0922/mne-python
 def quiver3d(self, x, y, z, u, v, w, color, scale, mode, resolution=8,
              glyph_height=None, glyph_center=None, glyph_resolution=None,
              opacity=1.0, scale_mode='none', scalars=None,
              backface_culling=False, line_width=2., name=None):
     _check_option('mode', mode, ALLOWED_QUIVER_MODES)
     with warnings.catch_warnings():
         warnings.filterwarnings("ignore", category=FutureWarning)
         factor = scale
         vectors = np.c_[u, v, w]
         points = np.vstack(np.c_[x, y, z])
         n_points = len(points)
         cell_type = np.full(n_points, vtk.VTK_VERTEX)
         cells = np.c_[np.full(n_points, 1), range(n_points)]
         args = (cells, cell_type, points)
         if not VTK9:
             args = (np.arange(n_points) * 3,) + args
         grid = UnstructuredGrid(*args)
         grid.point_arrays['vec'] = vectors
         if scale_mode == 'scalar':
             grid.point_arrays['mag'] = np.array(scalars)
             scale = 'mag'
         else:
             scale = False
         if mode == '2darrow':
             return _arrow_glyph(grid, factor), grid
         elif mode == 'arrow':
             alg = _glyph(
                 grid,
                 orient='vec',
                 scalars=scale,
                 factor=factor
             )
             mesh = pyvista.wrap(alg.GetOutput())
         else:
             if mode == 'cone':
                 glyph = vtk.vtkConeSource()
                 glyph.SetCenter(0.5, 0, 0)
                 glyph.SetRadius(0.15)
             elif mode == 'cylinder':
                 glyph = vtk.vtkCylinderSource()
                 glyph.SetRadius(0.15)
             else:
                 assert mode == 'sphere', mode  # guaranteed above
                 glyph = vtk.vtkSphereSource()
             if mode == 'cylinder':
                 if glyph_height is not None:
                     glyph.SetHeight(glyph_height)
                 if glyph_center is not None:
                     glyph.SetCenter(glyph_center)
                 if glyph_resolution is not None:
                     glyph.SetResolution(glyph_resolution)
                 # fix orientation
                 glyph.Update()
                 tr = vtk.vtkTransform()
                 tr.RotateWXYZ(90, 0, 0, 1)
                 trp = vtk.vtkTransformPolyDataFilter()
                 trp.SetInputData(glyph.GetOutput())
                 trp.SetTransform(tr)
                 glyph = trp
             glyph.Update()
             geom = glyph.GetOutput()
             mesh = grid.glyph(orient='vec', scale=scale, factor=factor,
                               geom=geom)
         _add_mesh(
             self.plotter,
             mesh=mesh,
             color=color,
             opacity=opacity,
             backface_culling=backface_culling
         )
コード例 #3
0
ファイル: _pyvista.py プロジェクト: marsipu/mne-python
 def quiver3d(self,
              x,
              y,
              z,
              u,
              v,
              w,
              color,
              scale,
              mode,
              resolution=8,
              glyph_height=None,
              glyph_center=None,
              glyph_resolution=None,
              opacity=1.0,
              scale_mode='none',
              scalars=None,
              colormap=None,
              backface_culling=False,
              line_width=2.,
              name=None,
              glyph_width=None,
              glyph_depth=None,
              glyph_radius=0.15,
              solid_transform=None):
     _check_option('mode', mode, ALLOWED_QUIVER_MODES)
     with warnings.catch_warnings():
         warnings.filterwarnings("ignore", category=FutureWarning)
         factor = scale
         vectors = np.c_[u, v, w]
         points = np.vstack(np.c_[x, y, z])
         n_points = len(points)
         cell_type = np.full(n_points, vtk.VTK_VERTEX)
         cells = np.c_[np.full(n_points, 1), range(n_points)]
         args = (cells, cell_type, points)
         if not VTK9:
             args = (np.arange(n_points) * 3, ) + args
         grid = UnstructuredGrid(*args)
         if scalars is not None:
             _point_data(grid)['scalars'] = np.array(scalars)
             scalars = 'scalars'
         _point_data(grid)['vec'] = vectors
         if scale_mode == 'scalar':
             scale = scalars
             scalars = None
         elif scale_mode == 'vector':
             scale = True
         else:
             scale = False
         if mode == '2darrow':
             return _arrow_glyph(grid, factor), grid
         elif mode == 'arrow':
             alg = _glyph(grid, orient='vec', scalars=scale, factor=factor)
             mesh = pyvista.wrap(alg.GetOutput())
         else:
             tr = None
             if mode == 'cone':
                 glyph = vtk.vtkConeSource()
                 glyph.SetCenter(0.5, 0, 0)
                 if glyph_radius is not None:
                     glyph.SetRadius(glyph_radius)
             elif mode == 'cylinder':
                 glyph = vtk.vtkCylinderSource()
                 if glyph_radius is not None:
                     glyph.SetRadius(glyph_radius)
             elif mode == 'oct':
                 glyph = vtk.vtkPlatonicSolidSource()
                 glyph.SetSolidTypeToOctahedron()
             else:
                 assert mode == 'sphere', mode  # guaranteed above
                 glyph = vtk.vtkSphereSource()
             if mode == 'cylinder':
                 if glyph_height is not None:
                     glyph.SetHeight(glyph_height)
                 if glyph_center is not None:
                     glyph.SetCenter(glyph_center)
                 if glyph_resolution is not None:
                     glyph.SetResolution(glyph_resolution)
                 tr = vtk.vtkTransform()
                 tr.RotateWXYZ(90, 0, 0, 1)
             elif mode == 'oct':
                 if solid_transform is not None:
                     assert solid_transform.shape == (4, 4)
                     tr = vtk.vtkTransform()
                     tr.SetMatrix(
                         solid_transform.astype(np.float64).ravel())
             if tr is not None:
                 # fix orientation
                 glyph.Update()
                 trp = vtk.vtkTransformPolyDataFilter()
                 trp.SetInputData(glyph.GetOutput())
                 trp.SetTransform(tr)
                 glyph = trp
             glyph.Update()
             geom = glyph.GetOutput()
             mesh = grid.glyph(orient='vec',
                               scale=scale,
                               factor=factor,
                               geom=geom)
         actor = _add_mesh(self.plotter,
                           mesh=mesh,
                           color=color,
                           opacity=opacity,
                           scalars=scalars,
                           colormap=colormap,
                           show_scalar_bar=False,
                           backface_culling=backface_culling)
     return actor, mesh