def test_biplot(self):
with tempfile.TemporaryDirectory() as output_dir:
biplot(output_dir, self.biplot,
sample_metadata=self.metadata)
index_fp = os.path.join(output_dir, 'index.html')
self.assertTrue(os.path.exists(index_fp))
self.assertTrue('src="./emperor.html"' in open(index_fp).read())
def test_biplot(self):
with tempfile.TemporaryDirectory() as output_dir:
biplot(output_dir, self.biplot,
sample_metadata=self.metadata)
index_fp = os.path.join(output_dir, 'index.html')
self.assertTrue(os.path.exists(index_fp))
self.assertTrue('src="./emperor.html"' in open(index_fp).read())
def test_biplot_with_feature_metadata(self):
feat_md = qiime2.Metadata(
pd.DataFrame(index=pd.Index(['x', 'y', 'z'], name='feature id'),
columns=['k', 'p'],
data=[['Bacteria', 'Firmicutes'],
['Bacteria', 'Firmicutes'],
['Bacteria', 'Bacteroidetes']]))
with tempfile.TemporaryDirectory() as output_dir:
biplot(output_dir, self.biplot,
sample_metadata=self.metadata, feature_metadata=feat_md)
index_fp = os.path.join(output_dir, 'index.html')
self.assertTrue(os.path.exists(index_fp))
self.assertTrue('src="./emperor.html"' in open(index_fp).read())
def test_biplot_with_feature_metadata(self):
feat_md = qiime2.Metadata(
pd.DataFrame(index=pd.Index(['x', 'y', 'z'], name='feature id'),
columns=['k', 'p'],
data=[['Bacteria', 'Firmicutes'],
['Bacteria', 'Firmicutes'],
['Bacteria', 'Bacteroidetes']]))
with tempfile.TemporaryDirectory() as output_dir:
biplot(output_dir, self.biplot,
sample_metadata=self.metadata, feature_metadata=feat_md)
index_fp = os.path.join(output_dir, 'index.html')
self.assertTrue(os.path.exists(index_fp))
self.assertTrue('src="./emperor.html"' in open(index_fp).read())
