Python run_commandの例

コード例 #1

    def test_failed_run_not_verbose(self):
        input_fp = self.get_data_path('aligned-dna-sequences-1.fasta')
        input_sequences = AlignedDNAFASTAFormat(input_fp, mode='r')
        result = NewickFormat()
        aligned_fp = str(input_sequences)
        tree_fp = str(result)

        cmd = ['FastTree', '-nt', '-not-a-real-parameter', aligned_fp]
        with self.assertRaises(subprocess.CalledProcessError):
            with redirected_stdio(stderr=os.devnull):
                run_command(cmd, tree_fp, verbose=False)

コード例 #2

ファイル: test_fasttree.py プロジェクト: qiime2/q2-phylogeny

    def test_failed_run_not_verbose(self):
        input_fp = self.get_data_path('aligned-dna-sequences-1.fasta')
        input_sequences = AlignedDNAFASTAFormat(input_fp, mode='r')
        result = NewickFormat()
        aligned_fp = str(input_sequences)
        tree_fp = str(result)

        cmd = ['FastTree', '-nt', '-not-a-real-parameter', aligned_fp]
        with self.assertRaises(subprocess.CalledProcessError):
            with redirected_stdio(stderr=os.devnull):
                run_command(cmd, tree_fp, verbose=False)