def setUp(self): # Ignore the returned dummy plugin object, just run this to verify the # plugin exists as the tests rely on it being loaded. get_dummy_plugin() # TODO standardize temporary directories created by QIIME self.test_dir = tempfile.TemporaryDirectory(prefix='qiime2-test-temp-') self.data_dir = os.path.join(self.test_dir.name, 'viz-output') os.mkdir(self.data_dir) mapping_viz(self.data_dir, { 'abc': 'foo', 'def': 'bar' }, { 'ghi': 'baz', 'jkl': 'bazz' }, key_label='Key', value_label='Value') self.provenance = Provenance( execution_uuid=uuid.UUID('7e909a23-21e2-44c2-be17-0723fae91dc8'), executor_reference=( 'dummy_action_id. Details on plugin, version, website, etc. ' 'will also be included, see ' 'https://github.com/biocore/qiime2/issues/26'), artifact_uuids={ 'input1': uuid.UUID('f16ca3d0-fe83-4b1e-8eea-7e35db3f6b0f'), 'input2': uuid.UUID('908dece5-db23-4562-ad03-876bb5750145') }, parameter_references={ 'param1': 'abc', 'param2': '100' })
def setUp(self): # TODO standardize temporary directories created by QIIME self.test_dir = tempfile.TemporaryDirectory(prefix='qiime2-test-temp-') # Using `mapping_viz` because it produces multiple files, including a # nested directory. self.data_dir = os.path.join(self.test_dir.name, 'viz-output') os.mkdir(self.data_dir) mapping_viz(self.data_dir, {'abc': 'foo', 'def': 'bar'}, {'ghi': 'baz', 'jkl': 'bazz'}, key_label='Key', value_label='Value') self.provenance = Provenance( execution_uuid=uuid.UUID('7e909a23-21e2-44c2-be17-0723fae91dc8'), executor_reference=( 'mapping_viz. Details on plugin, version, website, etc. ' 'will also be included, see ' 'https://github.com/biocore/qiime2/issues/26' ), artifact_uuids={ 'mapping1': uuid.UUID('f16ca3d0-fe83-4b1e-8eea-7e35db3f6b0f'), 'mapping2': uuid.UUID('908dece5-db23-4562-ad03-876bb5750145') }, parameter_references={ 'key_label': 'Key', 'value_label': 'Value' } )
def setUp(self): # TODO standardize temporary directories created by QIIME self.test_dir = tempfile.TemporaryDirectory(prefix='qiime2-test-temp-') # Using `mapping_viz` because it produces multiple files, including a # nested directory. self.data_dir = os.path.join(self.test_dir.name, 'viz-output') os.mkdir(self.data_dir) mapping_viz(self.data_dir, {'abc': 'foo', 'def': 'bar'}, {'ghi': 'baz', 'jkl': 'bazz'}, key_label='Key', value_label='Value')
def setUp(self): # Ignore the returned dummy plugin object, just run this to verify the # plugin exists as the tests rely on it being loaded. get_dummy_plugin() # TODO standardize temporary directories created by QIIME self.test_dir = tempfile.TemporaryDirectory(prefix='qiime2-test-temp-') self.data_dir = os.path.join(self.test_dir.name, 'viz-output') os.mkdir(self.data_dir) mapping_viz(self.data_dir, {'abc': 'foo', 'def': 'bar'}, {'ghi': 'baz', 'jkl': 'bazz'}, key_label='Key', value_label='Value')