def test_make_percent_align_filter(self):
"""make_percent_align_filter should return a percent align filter fn"""
d1 = {"% IDENTITY": "97.6"}
d2 = {"% IDENTITY": "0.0"}
d3 = {"% IDENTITY": "100.0"}
af1 = make_percent_align_filter(0.50)
af2 = make_percent_align_filter(0.00)
af3 = make_percent_align_filter(1.0)
# Test filter 1
self.assertTrue(af1(d1))
self.assertFalse(af1(d2))
self.assertTrue(af1(d3))
# Test filter 2
self.assertTrue(af2(d1))
self.assertTrue(af2(d2))
self.assertTrue(af2(d3))
# Test filter 3
self.assertFalse(af3(d1))
self.assertFalse(af3(d2))
self.assertTrue(af3(d3))
def test_make_percent_align_filter(self):
"""make_percent_align_filter should return a percent align filter fn"""
d1 = {"% IDENTITY": "97.6"}
d2 = {"% IDENTITY": "0.0"}
d3 = {"% IDENTITY": "100.0"}
af1 = make_percent_align_filter(0.50)
af2 = make_percent_align_filter(0.00)
af3 = make_percent_align_filter(1.0)
# Test filter 1
self.assertTrue(af1(d1))
self.assertFalse(af1(d2))
self.assertTrue(af1(d3))
# Test filter 2
self.assertTrue(af2(d1))
self.assertTrue(af2(d2))
self.assertTrue(af2(d3))
# Test filter 3
self.assertFalse(af3(d1))
self.assertFalse(af3(d2))
self.assertTrue(af3(d3))
def test_query_ids_from_blast_result(self):
"query_ids_from_blast_result should return query_ids matching filter"
align_filter = make_percent_align_filter(2.0) #none should pass
ok_ids, removed_ids= query_ids_from_blast_result(\
self.blast_result, align_filter, DEBUG = True)
self.assertEqualItems(ok_ids, set([]))
def test_query_ids_from_blast_result(self):
"query_ids_from_blast_result should return query_ids matching filter"
align_filter = make_percent_align_filter(2.0) # none should pass
ok_ids, removed_ids = query_ids_from_blast_result(
self.blast_result, align_filter, DEBUG=True)
self.assertEqual(ok_ids, set())
