def test_get_output_filepaths(self):
""" Generates output filepaths for fasta, qual files correctly """
output_dir = "."
fasta_fp = "seqs.fna"
qual_fp = "seqs.qual"
expected_fasta_fp = "./seqs_filtered.fasta"
expected_qual_fp = "./seqs_filtered.qual"
actual_fasta_fp, actual_qual_fp =\
get_output_filepaths(output_dir, fasta_fp, qual_fp)
self.assertEqual(actual_fasta_fp, expected_fasta_fp)
self.assertEqual(actual_qual_fp, expected_qual_fp)
# Test for relative paths
output_dir = "test/"
fasta_fp = "../seqs.fna"
qual_fp = "quality_scores/seqs.qual"
expected_fasta_fp = "test/seqs_filtered.fasta"
expected_qual_fp = "test/seqs_filtered.qual"
actual_fasta_fp, actual_qual_fp =\
get_output_filepaths(output_dir, fasta_fp, qual_fp)
self.assertEqual(actual_fasta_fp, expected_fasta_fp)
self.assertEqual(actual_qual_fp, expected_qual_fp)
def test_get_output_filepaths(self):
""" Generates output filepaths for fasta, qual files correctly """
output_dir = "."
fasta_fp = "seqs.fna"
qual_fp = "seqs.qual"
expected_fasta_fp = "./seqs_filtered.fasta"
expected_qual_fp = "./seqs_filtered.qual"
actual_fasta_fp, actual_qual_fp =\
get_output_filepaths(output_dir, fasta_fp, qual_fp)
self.assertEqual(actual_fasta_fp, expected_fasta_fp)
self.assertEqual(actual_qual_fp, expected_qual_fp)
# Test for relative paths
output_dir = "test/"
fasta_fp = "../seqs.fna"
qual_fp = "quality_scores/seqs.qual"
expected_fasta_fp = "test/seqs_filtered.fasta"
expected_qual_fp = "test/seqs_filtered.qual"
actual_fasta_fp, actual_qual_fp =\
get_output_filepaths(output_dir, fasta_fp, qual_fp)
self.assertEqual(actual_fasta_fp, expected_fasta_fp)
self.assertEqual(actual_qual_fp, expected_qual_fp)
