def test_check_labels_sampleids_all_valid(self):
""" Properly checks for QIIME labels, sampleID matching """
fasta_labels = ['seq1_1', 'seq1_2', 'seq2_3', 'seq1_4', 'seq4_5']
sample_ids = ['seq1', 'seq2', 'seq3', 'seq4']
total_seq_count = 5
perc_not_valid, perc_nosampleid_match =\
check_labels_sampleids(fasta_labels, sample_ids, total_seq_count)
expected_perc_not_valid = "%1.3f" % 0.0
expected_perc_nosampleid_match = "%1.3f" % 0.0
self.assertEqual(perc_not_valid, expected_perc_not_valid)
self.assertEqual(perc_nosampleid_match, expected_perc_nosampleid_match)
def test_check_labels_sampleids_all_valid(self):
""" Properly checks for QIIME labels, sampleID matching """
fasta_labels = ['seq1_1', 'seq1_2', 'seq2_3', 'seq1_4', 'seq4_5']
sample_ids = ['seq1', 'seq2', 'seq3', 'seq4']
total_seq_count = 5
perc_not_valid, perc_nosampleid_match =\
check_labels_sampleids(fasta_labels, sample_ids, total_seq_count)
expected_perc_not_valid = "%1.3f" % 0.0
expected_perc_nosampleid_match = "%1.3f" % 0.0
self.assertEqual(perc_not_valid, expected_perc_not_valid)
self.assertEqual(perc_nosampleid_match, expected_perc_nosampleid_match)
def test_check_labels_sampleids_with_problems(self):
""" Properly checks for QIIME labels, sampleID matching """
fasta_labels = ['seq1_1', 'seq1', 'seq2_3', 'seq1_4', 'seq4_5',
'seq4_6_1']
sample_ids = ['seq0', 'seq2', 'seq3', 'seq4']
total_seq_count = 6
perc_not_valid, perc_nosampleid_match =\
check_labels_sampleids(fasta_labels, sample_ids, total_seq_count)
expected_perc_not_valid = "%1.3f" % 0.333
expected_perc_nosampleid_match = "%1.3f" % 0.667
self.assertEqual(perc_not_valid, expected_perc_not_valid)
self.assertEqual(perc_nosampleid_match, expected_perc_nosampleid_match)
def test_check_labels_sampleids_with_problems(self):
""" Properly checks for QIIME labels, sampleID matching """
fasta_labels = ['seq1_1', 'seq1', 'seq2_3', 'seq1_4', 'seq4_5',
'seq4_6_1']
sample_ids = ['seq0', 'seq2', 'seq3', 'seq4']
total_seq_count = 6
perc_not_valid, perc_nosampleid_match =\
check_labels_sampleids(fasta_labels, sample_ids, total_seq_count)
expected_perc_not_valid = "%1.3f" % 0.333
expected_perc_nosampleid_match = "%1.3f" % 0.667
self.assertEqual(perc_not_valid, expected_perc_not_valid)
self.assertEqual(perc_nosampleid_match, expected_perc_nosampleid_match)