Python Artifact.peekの例

コード例 #1

ファイル: workspace.py プロジェクト: Keegan-Evans/q2studio

def inspect_artifact(uuid):
    try:
        metadata = Artifact.peek(ARTIFACTS[uuid])
    except Exception:
        abort(404)

    return jsonify({'uuid': metadata.uuid, 'type': metadata.type})

コード例 #2

ファイル: workspace.py プロジェクト: thermokarst/qiime-studio

def inspect_artifact(uuid):
    try:
        metadata = Artifact.peek(ARTIFACTS[uuid])
    except Exception:
        abort(404)

    return jsonify({'uuid': metadata.uuid, 'type': metadata.type})

コード例 #3

    def test_peek(self):
        artifact = Artifact.import_data(FourInts, [0, 0, 42, 1000])
        fp = os.path.join(self.test_dir.name, 'artifact.qza')
        artifact.save(fp)

        metadata = Artifact.peek(fp)

        self.assertIsInstance(metadata, ResultMetadata)
        self.assertEqual(metadata.type, 'FourInts')
        self.assertEqual(metadata.uuid, str(artifact.uuid))
        self.assertEqual(metadata.format, 'FourIntsDirectoryFormat')

コード例 #4

ファイル: test_artifact.py プロジェクト: jakereps/qiime2

    def test_peek(self):
        artifact = Artifact.import_data(FourInts, [0, 0, 42, 1000])
        fp = os.path.join(self.test_dir.name, 'artifact.qza')
        artifact.save(fp)

        metadata = Artifact.peek(fp)

        self.assertIsInstance(metadata, ResultMetadata)
        self.assertEqual(metadata.type, 'FourInts')
        self.assertEqual(metadata.uuid, str(artifact.uuid))
        self.assertEqual(metadata.format, 'FourIntsDirectoryFormat')

コード例 #5

ファイル: workspace.py プロジェクト: Keegan-Evans/q2studio

def get_artifacts():
    global ARTIFACTS
    ARTIFACTS = {}
    path = os.getcwd()
    artifact_paths = list(glob.glob(os.path.join(path, '*.qza')))
    artifacts = []
    for artifact_path in artifact_paths:
        try:
            metadata = Artifact.peek(artifact_path)
            name, _ = os.path.splitext(os.path.basename(artifact_path))
            artifacts.append(
                _result_record(metadata, name, '.inspect_artifact'))
            ARTIFACTS[metadata.uuid] = artifact_path
        except Exception:
            pass  # TODO: do better things when this happens

    return jsonify({'artifacts': artifacts})

コード例 #6

ファイル: workspace.py プロジェクト: thermokarst/qiime-studio

def get_artifacts():
    global ARTIFACTS
    ARTIFACTS = {}
    path = os.getcwd()
    artifact_paths = list(glob.glob(os.path.join(path, '*.qza')))
    artifacts = []
    for artifact_path in artifact_paths:
        try:
            metadata = Artifact.peek(artifact_path)
            name, _ = os.path.splitext(os.path.basename(artifact_path))
            artifacts.append(
                _result_record(metadata, name, '.inspect_artifact'))
            ARTIFACTS[metadata.uuid] = artifact_path
        except Exception:
            pass  # TODO: do better things when this happens

    return jsonify({'artifacts': artifacts})