def delete_preprocessed_data(self, study, user, callback):
"""Delete the selected preprocessed data
Parameters
----------
study : Study
The current study object
user : User
The current user object
callback : function
The callback function to call with the results once the processing
is done
"""
ppd_id = int(self.get_argument('preprocessed_data_id'))
try:
PreprocessedData.delete(ppd_id)
msg = ("Preprocessed data %d has been deleted" % ppd_id)
msg_level = "success"
ppd_id = None
except Exception as e:
msg = ("Couldn't remove preprocessed data %d: %s" %
(ppd_id, str(e)))
msg_level = "danger"
callback((msg, msg_level, 'preprocessed_data_tab', ppd_id, None))
def test_delete_advanced(self):
# testing that we can not remove cause preprocessed data has been
# submitted to EBI or VAMPS
ppd = PreprocessedData.create(
self.study, self.params_table,
self.params_id, self.filepaths, prep_template=self.prep_template)
# fails due to VAMPS submission
ppd.update_vamps_status('success')
with self.assertRaises(QiitaDBStatusError):
PreprocessedData.delete(ppd.id)
ppd.update_vamps_status('failed')
ppd = PreprocessedData(1)
with self.assertRaises(QiitaDBStatusError):
PreprocessedData.delete(ppd.id)
def test_delete_basic(self):
"""Correctly deletes a preprocessed data"""
# testing regular delete
ppd = PreprocessedData.create(
self.study, self.params_table,
self.params_id, self.filepaths, prep_template=self.prep_template)
PreprocessedData.delete(ppd.id)
# testing that the deleted preprocessed data can't be instantiated
with self.assertRaises(QiitaDBUnknownIDError):
PreprocessedData(ppd.id)
# and for completeness testing that it raises an error if ID
# doesn't exist
with self.assertRaises(QiitaDBUnknownIDError):
PreprocessedData.delete(ppd.id)
# testing that we can not remove cause the preprocessed data != sandbox
with self.assertRaises(QiitaDBStatusError):
PreprocessedData.delete(1)
